Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01248 ATGTCTTCCTCTTCCGGTTCTCCTTCCCCTTCTTCTGATTCCGGTTCCTCTTCTCCTCCACCTGCTCCTCCTACTGCTCCGCCTCCTGATTCTTCTTCCTCTTCTTCTCCGCCTCCTCCTGATTCTTCTCCGCCTCCGCCTGATTCGTCCTCTTCTTCTCCGCCTCCTCCAGATTCATCCTCTTCTTCTCCTCCGCCGGATTCTTCTTCCTCTTCTCCTCCTCCTCCTGATGCTTCTTCTCCACCTCCGCCAGATGCATCCCCATCGTCACCGCCTCCTAAGGATCCGCCTTCTTCACCACCGCCGAAGAAAGGGGATGGGGATGGGAAATCTTCTCCTTCGCCTCCGTCTCCTGATTCGCCGTTTTCGCCGCCTCCTCCGCCACCGCCACCACCACCGCCGCCGCCGCCGCCACCTCCTCCGCCGAATGATTCGTCGAGGCATTCTCCTCCTTCTCCGAGATCGATCAACTCAAGATCTACGGACTCGTCGTCCGATGGATCTGCACCGGAGGCGATGCCGATCATTGTAGGAGTGGCGGTGGCGGCTGGGTTTTTGTTATTTGCTATGGCGTTGATATTCTTCGCCTGCACCCGAAAGAAGAAGAAGCAAAATAATAGTTCCATGTACTACGACGACCCGTCCGGTCCCAAAGGTGGGGATCCGTATTACAACAACGGAAGGAATCATAACTGGAACAATCCCGGCGAACATTACGTGAACATGGCGCCCATCACCGGCGGCGGAGGCCAAGTAGGAGTATGGCCATCGCCCCCGCCTCCTCCTCCTCCGCCGGGAGCCAGCAGTGACATGAGCTCCAATTTCTCAGGGCCACAGGGACCACCGTTGCCGCCGCCGCACCCAGCGGTGGCGCTTGGGTTCAGTAAGAGCACTTTCACCTTCGACGAGCTGATGGCGGCGACGTCAGGATTCTCTCCGGCAAATCTGTTGGGGCAAGGGGGATTCGGGTACGTTCATAAAGGAGTACTGCCAAATGGGAAGGAAATTGCCGTGAAAAGCCTGAAAACGGGAAGCCGGCAAGGAGATCGGGAATTCGCGGCGGAGGTGGAGATCATAAGTCGTGTCCACCACCGGCATTTGGTATCCCTTGTCGGATATTGTATTGCCGGTGACCGGAAGATGTTGGTTTACGAATTTGTTCCTAATAACAACCTCGAATTCCACCTTCACGGCGAGGGGAGGCCACCTTTGGACTGGTCGACTAGGGTGAAGATCGCATTGGGTTCGGCTAAGGGCTTGGCCTATCTCCACGAAGATTGTCATCCTCGCATTATCCATAGAGATATCAAAACTGCCAATATTCTTATAGACATGAGTTTCGAAGCTAAGGTGGCTGATTTTGGATTGGCGAAGCTCAACCAAGACAATTACACTCATGTATCTACACGAGTTATGGGCACATTTGGATATTTAGCTCCAGAGTATGCATCAAGTGGTAAGCTAACAGAGAAATCAGATGTATTCTCATTTGGTGTAATGCTTCTAGAACTGATTACCGGAAAACAACCAGTGGATGCAACCGGAGAAATGGAAGACAGCTTAGTGGACTGGTCTAGGCCTCTTTGTACAAAAGCAACGAGCCCCGAAGGAAATTTTGAGTTGGTTGATCCAAGGTTGGAGAAGAACTATGATATTCAAGAAATGGCTTGCATGGTGGCTTGCGCCGCTGCTTGCGTTCGACATTCTGCTCGACGTCGTCCTAAAATGAGCCAGGTGGTACGAGCGTTAGAAGGCGATGTGTCATTAGAGGACTTGAACGATGGAGTAAAGCCAGGGCAAAGCTCATACTTCGGGTCCGGCACATCCTCAGAGTACGACGCAAGTTCCTACAGCGCCGACATGAGGAAGTTTCGAAAAGTGGCGTTGGACACCCATGAGTACGCAAGCAGTGATTACGGAGGCACTAGTGAGTACGGCCTAAACCCTTCCTCAACAAGCAGCGAAATCAGTCGAAAACCTAGTGCCCTTTCCTCTCCCATTACTGGACAACCCTCCAATCCCTAA 2025 52.94 MSSSSGSPSPSSDSGSSSPPPAPPTAPPPDSSSSSSPPPPDSSPPPPDSSSSSPPPPDSSSSSPPPDSSSSSPPPPDASSPPPPDASPSSPPPKDPPSSPPPKKGDGDGKSSPSPPSPDSPFSPPPPPPPPPPPPPPPPPPPNDSSRHSPPSPRSINSRSTDSSSDGSAPEAMPIIVGVAVAAGFLLFAMALIFFACTRKKKKQNNSSMYYDDPSGPKGGDPYYNNGRNHNWNNPGEHYVNMAPITGGGGQVGVWPSPPPPPPPPGASSDMSSNFSGPQGPPLPPPHPAVALGFSKSTFTFDELMAATSGFSPANLLGQGGFGYVHKGVLPNGKEIAVKSLKTGSRQGDREFAAEVEIISRVHHRHLVSLVGYCIAGDRKMLVYEFVPNNNLEFHLHGEGRPPLDWSTRVKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNYTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKQPVDATGEMEDSLVDWSRPLCTKATSPEGNFELVDPRLEKNYDIQEMACMVACAAACVRHSARRRPKMSQVVRALEGDVSLEDLNDGVKPGQSSYFGSGTSSEYDASSYSADMRKFRKVALDTHEYASSDYGGTSEYGLNPSSTSSEISRKPSALSSPITGQPSNP* 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12215725 12221125 + CsaV3_2G014640.1 Csa02g01248 519305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01248 674 Gene3D Transferase(Phosphotransferase) domain 1 387 594 - -
Csa02g01248 674 SUPERFAMILY Protein kinase-like (PK-like) 288 583 IPR011009 -
Csa02g01248 674 MobiDBLite consensus disorder prediction 636 674 - -
Csa02g01248 674 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 26 641 - -
Csa02g01248 674 SMART serkin_6 311 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01248 674 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Csa02g01248 674 MobiDBLite consensus disorder prediction 247 289 - -
Csa02g01248 674 MobiDBLite consensus disorder prediction 254 268 - -
Csa02g01248 674 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 26 641 - -
Csa02g01248 674 MobiDBLite consensus disorder prediction 14 103 - -
Csa02g01248 674 MobiDBLite consensus disorder prediction 203 229 - -
Csa02g01248 674 ProSiteProfiles Protein kinase domain profile. 311 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01248 674 MobiDBLite consensus disorder prediction 149 168 - -
Csa02g01248 674 Gene3D Phosphorylase Kinase; domain 1 289 386 - -
Csa02g01248 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Csa02g01248 674 MobiDBLite consensus disorder prediction 1 169 - -
Csa02g01248 674 Pfam Protein tyrosine and serine/threonine kinase 316 583 IPR001245 GO:0004672|GO:0006468
Csa02g01248 674 MobiDBLite consensus disorder prediction 114 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01248 Csa-Chr2:12215725 Csa04g00511 Csa-Chr4:3365923 0 dispersed
Csa02g01248 Csa-Chr2:12215725 Csa05g03083 Csa-Chr5:30852236 5.91E-145 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77893 PF07714 PK_Tyr_Ser-Thr 3.40E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01248 - - csv:101217306 921.383