Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01258 ATGGTCAACATCTTCCACATCTACGACCAGGTTCTTCGTTGGGTAATGAAAGCAGCCGGAATCAAACCGGTTCAGCTTCAAATCAAACCCGGAACCGCCATGAACTTCTGGGTTCCCGCCGGAAAACCAAACAAAAACCACCAAAACCATCCTCCCCTCCTTTTCCTCCATGGGTTCGCCACCAATGCCATTATGACATGGCAATTCCAAGTCCTGAAGTTCGCCAAAAACCACGCCGTTTATGTACCGGACTTCATGTTCTTCGGGGATTCCGTTACGGATCGGCCGGACCGAACGACGGAGTTTCAGGCGGAGTGCGTGGTGGAGGGGTTGAGAAAATTGGGTGTGGACCGAAGGTTTGTTTTGGTGGGGTTTAGTTATGGGGCGATGGTGGGGTTTAGATTGGCGGAGATGTATCCGGAAATGGTGGAGGCGATGGTGGTTACGGCGGCGCCGACGGTGCTGACGGAAAGGATTACCGGAGAGGCAATGGAAAAAATAGGGTATAAGAGTTGGTCTGAATATTTGATACCGGAGACGGTGAAGGGTGCTATTTCTATGCTTCAAATTGCTTCCTTTGAATTTCCACGATTTCCACGTTGGATTTTCAAGCAATATCTGGAGGCCATGGTTGTTCACAGAAAGGAGAGGGCAGAACTCCTTGAAGCATTGGTTGCTCCAAATGATGTCACCATCTCTCAATATCCACAGAAGTTGCATATCATATGGGGGAGAAATGATAATTTGTTTGATATTCAAATTGCTTACAATATGAAGGAGAAATTTGGAGAAAAAGCAACAATGGATTGCATAGAAAAAGCAGGGCATATTGTAGCAATGGAGCGCCCATTCATCTATAACAAATGCCTTCAAAAGTTTCTTCATTCACTGGAAGATAACCCCTACGAATGA 912 46.49 MVNIFHIYDQVLRWVMKAAGIKPVQLQIKPGTAMNFWVPAGKPNKNHQNHPPLLFLHGFATNAIMTWQFQVLKFAKNHAVYVPDFMFFGDSVTDRPDRTTEFQAECVVEGLRKLGVDRRFVLVGFSYGAMVGFRLAEMYPEMVEAMVVTAAPTVLTERITGEAMEKIGYKSWSEYLIPETVKGAISMLQIASFEFPRFPRWIFKQYLEAMVVHRKERAELLEALVAPNDVTISQYPQKLHIIWGRNDNLFDIQIAYNMKEKFGEKATMDCIEKAGHIVAMERPFIYNKCLQKFLHSLEDNPYE* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12311152 12313801 - CsaV3_2G014740.1 Csa02g01258 519315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01258 303 PANTHER SI:DKEY-122A22.2 2 294 - -
Csa02g01258 303 PANTHER EPOXIDE HYDROLASE 4-LIKE 2 294 - -
Csa02g01258 303 SUPERFAMILY alpha/beta-Hydrolases 26 294 IPR029058 -
Csa02g01258 303 Pfam alpha/beta hydrolase fold 51 165 IPR000073 -
Csa02g01258 303 Gene3D alpha/beta hydrolase 7 300 IPR029058 -
Csa02g01258 303 PRINTS Alpha/beta hydrolase fold signature 77 92 IPR000073 -
Csa02g01258 303 PRINTS Alpha/beta hydrolase fold signature 122 135 IPR000073 -
Csa02g01258 303 PRINTS Alpha/beta hydrolase fold signature 136 149 IPR000073 -
Csa02g01258 303 PRINTS Alpha/beta hydrolase fold signature 239 253 IPR000073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01258 - - - csv:101216828 624.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01258 Csa-Chr2:12311152 Csa06g02001 Csa-Chr6:18009738 1.42E-46 dispersed
Csa02g01258 Csa-Chr2:12311152 Csa04g00559 Csa-Chr4:3719981 4.20E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g601 . . Bda06g00935 . . . . Bma12g00515 . . . . Car02g00258 . . . . . . . . . . . . . . . . . . . . . Cone10ag0964 Lsi10g00369 . . . . . . . . . . . Sed05g3619 Cmo02g00401 . . . . . . Cpe05g01261 Bhi10g02010 Tan05g1308 Cmetu07g0234 . Hepe08g1015 . . . . . . . . . . Csa02g01258 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002258 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 1 2 2 3 2 2 2 5 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01258 Csa_Chr02 FPKM 0.513173 0.203706 14.27933 15.780719 12.565495 10.258886 12.229181 0.312681 0.315394 0.332391