Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g01259 | ATGTTGGAGTCGGAGATGACCGCGTCGGCTCGTTTCAAACGACAGAAAACACACCCTGACAGCCTGAGCTTGTCTTCGGTATCGACTCCGGCAAGTCGGGTCGATCATTTCGAAGATTTAGTTGCACCTGGAGGTTGGCCTGAGTTGGCTAAGTACGAGATCTCCTCTAAAGAGCTTCGAACCAATCCGATGGGTTCGTCCCGGGTAAAGGCAATTAACTGGAGGACTGTGGAGGGAGAGATTCCGAAAAAGATGAGAAAAGGAAAGAACAAAGAAACGAAATCGAAAATAGATAAAGAAAACAATAATAATGTTGAATGGGATGAGAATGGATCAAAAGATGACAGGTTAGAGAAGAAAATGAAAGAAAAGGTTGAAGAAGAAGATGAAGAGTCAAAGGTTACTGAGGAAACAGAGAGATGGAAAAAACACAATAATTCAAAAGGTTCAGAAGAAATTAAAAAAATGGATTATGTTCATGTTCGAGCTCGTCGTGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGAAGAGAGAAGATAAGTGAAAGAATGAAGTATTTGCAAAATTTGGTGCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCCATGAAAGTGGCTGCTCTAAACCACAGAGTTGATTTCATCAATGTAGATGATCTCTTGGCCAAGCAGATGTTTCCGACTATAACGGACAATCGTTCATCCTACGATACTCAACTAGGAATAATGGGTTCAAGCTCTCTAACAATTCCTCAAACTCCATTGATCAACAGCAACTTGTCTTCAATTACTCATTTTGAAGTGTCTTCAACGTGGGGAGGTGAATTACAAAGATTTGAAGAAGGTGGAGGGGGGCCGCCATTGTTGTCACCATCAAGCTTTTTATCTCACCAATGTTCTGTCATTGAAGATGAAAATGAAACATTATTTATGGACCACAAACTTCTTCTTCCATTTTAA | 1029 | 40.23 | MLESEMTASARFKRQKTHPDSLSLSSVSTPASRVDHFEDLVAPGGWPELAKYEISSKELRTNPMGSSRVKAINWRTVEGEIPKKMRKGKNKETKSKIDKENNNNVEWDENGSKDDRLEKKMKEKVEEEDEESKVTEETERWKKHNNSKGSEEIKKMDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDLLAKQMFPTITDNRSSYDTQLGIMGSSSLTIPQTPLINSNLSSITHFEVSSTWGGELQRFEEGGGGPPLLSPSSFLSHQCSVIEDENETLFMDHKLLLPF* | 343 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 12321166 | 12324655 | + | CsaV3_2G014750.1 | Csa02g01259 | 519316 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g01259 | 342 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Csa02g01259 | 342 | Coils | Coil | 214 | 234 | - | - | |
Csa02g01259 | 342 | Pfam | Helix-loop-helix DNA-binding domain | 171 | 218 | IPR011598 | GO:0046983 | |
Csa02g01259 | 342 | MobiDBLite | consensus disorder prediction | 84 | 149 | - | - | |
Csa02g01259 | 342 | SMART | finulus | 173 | 223 | IPR011598 | GO:0046983 | |
Csa02g01259 | 342 | PANTHER | TRANSCRIPTION FACTOR BHLH74 | 3 | 246 | - | - | |
Csa02g01259 | 342 | PANTHER | TRANSCRIPTION FACTOR BHLH74 | 247 | 334 | - | - | |
Csa02g01259 | 342 | Gene3D | - | 164 | 239 | IPR036638 | GO:0046983 | |
Csa02g01259 | 342 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 167 | 217 | IPR011598 | GO:0046983 | |
Csa02g01259 | 342 | Coils | Coil | 117 | 138 | - | - | |
Csa02g01259 | 342 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 165 | 237 | IPR036638 | GO:0046983 | |
Csa02g01259 | 342 | Coils | Coil | 90 | 110 | - | - | |
Csa02g01259 | 342 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 3 | 246 | IPR024097 | GO:0006355 | |
Csa02g01259 | 342 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 247 | 334 | IPR024097 | GO:0006355 | |
Csa02g01259 | 342 | CDD | bHLH_AtBPE_like | 157 | 243 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01259 | Csa-Chr2:12321166 | Csa07g01563 | Csa-Chr7:16047841 | 5.86E-46 | dispersed | |
Csa02g01259 | Csa-Chr2:12321166 | Csa07g00008 | Csa-Chr7:185656 | 5.05E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30923 | PF00010 | HLH | 2.70E-06 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g01259 | - | - | csv:101216346 | 627.091 |