Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01259 ATGTTGGAGTCGGAGATGACCGCGTCGGCTCGTTTCAAACGACAGAAAACACACCCTGACAGCCTGAGCTTGTCTTCGGTATCGACTCCGGCAAGTCGGGTCGATCATTTCGAAGATTTAGTTGCACCTGGAGGTTGGCCTGAGTTGGCTAAGTACGAGATCTCCTCTAAAGAGCTTCGAACCAATCCGATGGGTTCGTCCCGGGTAAAGGCAATTAACTGGAGGACTGTGGAGGGAGAGATTCCGAAAAAGATGAGAAAAGGAAAGAACAAAGAAACGAAATCGAAAATAGATAAAGAAAACAATAATAATGTTGAATGGGATGAGAATGGATCAAAAGATGACAGGTTAGAGAAGAAAATGAAAGAAAAGGTTGAAGAAGAAGATGAAGAGTCAAAGGTTACTGAGGAAACAGAGAGATGGAAAAAACACAATAATTCAAAAGGTTCAGAAGAAATTAAAAAAATGGATTATGTTCATGTTCGAGCTCGTCGTGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGAAGAGAGAAGATAAGTGAAAGAATGAAGTATTTGCAAAATTTGGTGCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCCATGAAAGTGGCTGCTCTAAACCACAGAGTTGATTTCATCAATGTAGATGATCTCTTGGCCAAGCAGATGTTTCCGACTATAACGGACAATCGTTCATCCTACGATACTCAACTAGGAATAATGGGTTCAAGCTCTCTAACAATTCCTCAAACTCCATTGATCAACAGCAACTTGTCTTCAATTACTCATTTTGAAGTGTCTTCAACGTGGGGAGGTGAATTACAAAGATTTGAAGAAGGTGGAGGGGGGCCGCCATTGTTGTCACCATCAAGCTTTTTATCTCACCAATGTTCTGTCATTGAAGATGAAAATGAAACATTATTTATGGACCACAAACTTCTTCTTCCATTTTAA 1029 40.23 MLESEMTASARFKRQKTHPDSLSLSSVSTPASRVDHFEDLVAPGGWPELAKYEISSKELRTNPMGSSRVKAINWRTVEGEIPKKMRKGKNKETKSKIDKENNNNVEWDENGSKDDRLEKKMKEKVEEEDEESKVTEETERWKKHNNSKGSEEIKKMDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDLLAKQMFPTITDNRSSYDTQLGIMGSSSLTIPQTPLINSNLSSITHFEVSSTWGGELQRFEEGGGGPPLLSPSSFLSHQCSVIEDENETLFMDHKLLLPF* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12321166 12324655 + CsaV3_2G014750.1 Csa02g01259 519316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01259 342 MobiDBLite consensus disorder prediction 1 30 - -
Csa02g01259 342 Coils Coil 214 234 - -
Csa02g01259 342 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Csa02g01259 342 MobiDBLite consensus disorder prediction 84 149 - -
Csa02g01259 342 SMART finulus 173 223 IPR011598 GO:0046983
Csa02g01259 342 PANTHER TRANSCRIPTION FACTOR BHLH74 3 246 - -
Csa02g01259 342 PANTHER TRANSCRIPTION FACTOR BHLH74 247 334 - -
Csa02g01259 342 Gene3D - 164 239 IPR036638 GO:0046983
Csa02g01259 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 217 IPR011598 GO:0046983
Csa02g01259 342 Coils Coil 117 138 - -
Csa02g01259 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 237 IPR036638 GO:0046983
Csa02g01259 342 Coils Coil 90 110 - -
Csa02g01259 342 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 3 246 IPR024097 GO:0006355
Csa02g01259 342 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 247 334 IPR024097 GO:0006355
Csa02g01259 342 CDD bHLH_AtBPE_like 157 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01259 Csa-Chr2:12321166 Csa07g01563 Csa-Chr7:16047841 5.86E-46 dispersed
Csa02g01259 Csa-Chr2:12321166 Csa07g00008 Csa-Chr7:185656 5.05E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30923 PF00010 HLH 2.70E-06 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01259 - - csv:101216346 627.091