Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01264 ATGGCCATGGGTCCTGGAGATATGACAACAGCAAGGCTAATAAGAGTGGATGGATCAGGAAATGGAGACTTCAAAAAAATTCAACAAGCAATTGATTCTGTTCCTTCTCAAAACAATGAACTCGTTTTCATTTGGGTTAAGCCTGGAACTTACAGAGAGAAAATAGTGGTACCTGAGGACAAGCCCTACATAACAATAAGCGGCAGTAAGGCCTCCGATACAAAAATCACATGGAACCAAGGAAGAGATTTACTTGAATCTCCGGTTGTATCTATCTTTGCTTCTGATTTTGTCGGTCGTTTTCTGACAATCGAAAACACATTTGGCACAACTGGCATTGCGGTGGCATTAAGGGTTTCCGCCGATAGAGCAGCCTTTTACGGCTGTCGGATCATCTCCTTTCAAGACACCCTTTTGGACGACACTGGAAGACATTACTTCAATAATTGTTACATAGAAGGAGCCACCGATTTCATTTGCGGGAATGCCGCTTCTCTATACGAGAAGTGTCATTTGCATTCGACGTCGGATAGAGGTGGGGCGATGACGGCGCAGCATCGAAACACGGGGGAGGAAAACACAGGGTTCGTGTTCTTGGGAGGAAAAATAACAGGAAGTGGATCCATGTTTCTTGGACGGCCATGGGGGGATTTCTCTAAAGTTGTGTTTGGGTACACTTACATGTCCAATGTTGTTGAACCTGAGGGTTGGAATGATTGGGGAGATCCAACCAAGCAAAGAACGGTGTTGTATGGAGAATACAAATGTTATGGGCTCGGAGCAAACAGAGATAAAAGAGTGGTATGGTCACGTAGTTTGTCGACGGATGAGGCTTCAAAACTTTTCACCAAAGACATCATTGGTGGTCGAGCTTGGCTTCGACCTGCACCATCTCATTTCAAAGGGGGCTTTCCCTAG 918 45.21 MAMGPGDMTTARLIRVDGSGNGDFKKIQQAIDSVPSQNNELVFIWVKPGTYREKIVVPEDKPYITISGSKASDTKITWNQGRDLLESPVVSIFASDFVGRFLTIENTFGTTGIAVALRVSADRAAFYGCRIISFQDTLLDDTGRHYFNNCYIEGATDFICGNAASLYEKCHLHSTSDRGGAMTAQHRNTGEENTGFVFLGGKITGSGSMFLGRPWGDFSKVVFGYTYMSNVVEPEGWNDWGDPTKQRTVLYGEYKCYGLGANRDKRVVWSRSLSTDEASKLFTKDIIGGRAWLRPAPSHFKGGFP* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12354798 12357629 + CsaV3_2G014800.1 Csa02g01264 519321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01264 305 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 8 295 - -
Csa02g01264 305 SUPERFAMILY Pectin lyase-like 9 301 IPR011050 -
Csa02g01264 305 Gene3D - 8 303 IPR012334 -
Csa02g01264 305 Pfam Pectinesterase 17 284 IPR000070 GO:0030599|GO:0042545
Csa02g01264 305 PANTHER PECTINESTERASE 11-RELATED 8 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01264 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101215864 635.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01264 Csa-Chr2:12354798 Csa01g02872 Csa-Chr1:25242995 2.19E-85 dispersed
Csa03g01521 Csa-Chr3:11292633 Csa02g01264 Csa-Chr2:12354798 1.30E-73 transposed
Csa05g03005 Csa-Chr5:30349629 Csa02g01264 Csa-Chr2:12354798 1.46E-74 transposed
Csa07g01935 Csa-Chr7:19147648 Csa02g01264 Csa-Chr2:12354798 5.83E-78 transposed
Csa05g00422 Csa-Chr5:2799276 Csa02g01264 Csa-Chr2:12354798 2.95E-79 transposed
Csa02g01264 Csa-Chr2:12354798 Csa02g02065 Csa-Chr2:18904116 1.52E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g375 . . . . . . . . . . Cma02g00394 . Car02g00256 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00375 . Chy11g00374 . . . . . . . . . Sed05g3617 . . . . . . . Cpe05g01263 Bhi10g02000 Tan05g1298 Cmetu11g1012 . Hepe08g1012 . . . . . . . . . . Csa02g01264 . Cme11g00120
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01264 Csa_Chr02 FPKM 0.827225 0.760591 1.326044 0.0 3.39112 4.30097 3.066453 0.0 0.0 0.0