Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01266 ATGGCTCAGAAGGTTCTTATCATCGGAGGAACTGGCTACATCGGTAAATTCATCGTACAAGCCAGCGCCAAAGCTGGTCATCCTACATATGCATTGATCCGCAGGTCTTCGCTCGAAAGCCCCGCCAAGAATCGAATCCTCAATCATTTCAAAAGCTTAGGAGTCAATTTTCTCTTCGGTGATCTCTTTGACAATGAGAGTTTGGTTAAGGCGATTAAGCAGGTTGATGTGGTGATATCAACCCTTGGTGGCCATATGGTTCCCCATCAACATAAGATCCTATCTGCTATCAAGCAAGCTGGCAATGTGAAGAGGTTCTTTCCTTCTGAGTTCGGTAACGATGCGGATCATATCGATGCTGTGGAACCAGCGAAATCTATGTATGCTGCAAAGGCTGAATTTCGTAGGGCTATTGAAGCTGAGGGAATCCCACATACATTTGTGGTATGCAATTTCTTCGATGGTTACTTTCTTAGCAACTTGTCTCAGCCAGATGCAAGCGTCCCACCTAGAGACAAAGTCGTTATCTTAGGAGATGGAACTCCCAAAGTCATTTACAACAAGGAAGAAGACGTTGGAACGTACACAATCCGAGCAATAGATGATCCAAGAACCCTCAACAAGATCATGTACCTTAGGCCCCCAGCTAACATCTACTCAACCAATGATCTCGTGTCGCTGTGGGAGAGAAAAATTGGCAAGAGTCTTAAAAGAATCTATGTACCAGAGGAAGAAGTATTGAAGAAAATCCGAGAGACTTCATATCCACTTAATATAGAATTGGCACTATGTCACACTGCTCAAGTGAAGGGATGTCAAACTAATTTTAGTATTGAACCATCTTTTGGAGTTGAAGCTTCAGCATTGTACCCAGATGTTCGATATACAACTGTAGAAGAATACCTCGACCAGTTTGTCTAA 921 43.11 MAQKVLIIGGTGYIGKFIVQASAKAGHPTYALIRRSSLESPAKNRILNHFKSLGVNFLFGDLFDNESLVKAIKQVDVVISTLGGHMVPHQHKILSAIKQAGNVKRFFPSEFGNDADHIDAVEPAKSMYAAKAEFRRAIEAEGIPHTFVVCNFFDGYFLSNLSQPDASVPPRDKVVILGDGTPKVIYNKEEDVGTYTIRAIDDPRTLNKIMYLRPPANIYSTNDLVSLWERKIGKSLKRIYVPEEEVLKKIRETSYPLNIELALCHTAQVKGCQTNFSIEPSFGVEASALYPDVRYTTVEEYLDQFV* 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12363449 12366223 + CsaV3_2G014820.1 Csa02g01266 519323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01266 306 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 253 IPR036291 -
Csa02g01266 306 PANTHER PINORESINOL REDUCTASE-RELATED 3 306 - -
Csa02g01266 306 Gene3D - 4 292 - -
Csa02g01266 306 PANTHER PHENYLCOUMARAN BENZYLIC ETHER REDUCTASE 1 3 306 - -
Csa02g01266 306 CDD PCBER_SDR_a 4 301 IPR045312 GO:0016491
Csa02g01266 306 Gene3D - 152 302 - -
Csa02g01266 306 Pfam NmrA-like family 5 269 IPR008030 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01266 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] - csv:101209800 613.224
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01266 Csa-Chr2:12363449 Csa07g00666 Csa-Chr7:4745637 3.39E-156 dispersed
Csa02g01265 Csa-Chr2:12359415 Csa02g01266 Csa-Chr2:12363449 7.01E-107 tandem
Csa02g01266 Csa-Chr2:12363449 Csa02g01267 Csa-Chr2:12368145 3.18E-168 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g369 . . . . . . . . . . . Cma20g00845 . . Sed04g3918 . . Bhi05g01243 Tan02g0785 Cmetu01g0437 . Hepe02g0491 . . . . . . . . . . . . . Lsi10g00377 . . . . . . . . . . . Sed05g3616 . . . . . . . . Bhi10g01997 Tan05g1295 Cmetu11g0943 . Hepe08g1010 . . . . . . . . . . Csa02g01266 . Cme11g00122
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01266 Csa_Chr02 FPKM 3.619403 3.48895 2.006781 1.770191 12.236096 11.460099 11.424635 0.76888 1.270825 0.885234