Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01274 ATGGCTGAATCAAATCAAACGCAATGCATCGCTATGGATTCCGCCACCGCATTACAACAATATCTTGATCACATCCCCGTCAGTTCCATCTCCGGCATCAAGTCCTCCGTCGTTTTGGAAGTCAAGACTGGGGACTTCGTTAAGGATGCAATACGAATAATGTTTCAGAAGAATGTGGCTTCTGCGCTCATCGCCGATGTCTCCACCGACGGTTTCCCTGATCGGTTTATTGGCTTTGTTCATCTCTCAAGCTTGCTTCTATGGTGTATTCAGGAGATTCGAAAATTGGAGAATGAAATTGAGTGTATTGAGTCCGAGGACACTAAAGAGACTGTTTGTGGGATTTTGGGGTTTCTTGAACAGAATCCACACATTGGCCAAACCAAGGTGGGTGAGTTGGGAAAGACATTCTTGTGGGATCCTTATTTTCCTGTTGGGATGAGGGATACACTTTTCCATGTTCTTCTTATGCTTTCAAAGCATCGGTTACAAGCTGTTCCTGTGGTTGAGCTTTCCAATTCTCACGTTATTGGTTTCATTACACAGAGTGCAGTAATTCATTTGCTTCTGGAATCAAGTGGATTGGAGTGGTTCGATGGCATCGCGGACAAAGTTATATCAGACTTTCGGTTTGATAATGAAGAGCATGTTCTCCATGTCTATGGTGACCAAAACATTATAGAAGCTTTTCATATACTATGGAATAAACAAATTGGTGCAGTTGCTGTAACGGATAGAGGAAGTAAGACGCTTATTGGTTGTTTGAGGAAAAGTGACGCATATCTTCTCTTGGAGAAGGAAGATTTATTTCAGAACAGAAAAAGGATAACAGTGAAGGAGTTCATTCATATGGAACCAAATAAAGGACGAGTGGACGCTAAAATAACAGTCGAAGGGAGCCAAGGGGCACTTACCTTGTCCGGTGCGCGTTCTCTAATTAATGGCAAACTTCCAAATATGCACACCCCAGTGACGAACAAGAGAGATGACACACTGAAGCAAGTAATGAAAACTATGGTAGAGACAAATAGCAGTTTCAGCTTTCTTGTCAATAATTTGCAGCAAGCAACGGGGATACTTACTTTGCGAGATATGATAACTCAGTTTGCTCCTCCCTGTATGAATTCAACCATTCAAGGAGGTAGTTTTTTTGAATCTGCTCTGGAACAAACTGGGTGTCAGGTGGATACCTTGGGTTCCCTTTTAGTCCCAGGACGAGCAATCCTCTGA 1230 42.68 MAESNQTQCIAMDSATALQQYLDHIPVSSISGIKSSVVLEVKTGDFVKDAIRIMFQKNVASALIADVSTDGFPDRFIGFVHLSSLLLWCIQEIRKLENEIECIESEDTKETVCGILGFLEQNPHIGQTKVGELGKTFLWDPYFPVGMRDTLFHVLLMLSKHRLQAVPVVELSNSHVIGFITQSAVIHLLLESSGLEWFDGIADKVISDFRFDNEEHVLHVYGDQNIIEAFHILWNKQIGAVAVTDRGSKTLIGCLRKSDAYLLLEKEDLFQNRKRITVKEFIHMEPNKGRVDAKITVEGSQGALTLSGARSLINGKLPNMHTPVTNKRDDTLKQVMKTMVETNSSFSFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVDTLGSLLVPGRAIL* 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12406841 12409323 - CsaV3_2G014900.1 Csa02g01274 519331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01274 409 CDD CBS_pair_SF 140 259 - -
Csa02g01274 409 Gene3D - 200 370 IPR046342 -
Csa02g01274 409 PANTHER OS01G0633400 PROTEIN 5 396 - -
Csa02g01274 409 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 5 396 - -
Csa02g01274 409 SUPERFAMILY CBS-domain pair 216 371 IPR046342 -
Csa02g01274 409 ProSiteProfiles CBS domain profile. 138 195 IPR000644 -
Csa02g01274 409 SUPERFAMILY CBS-domain pair 18 191 IPR046342 -
Csa02g01274 409 Pfam CBS domain 140 190 IPR000644 -
Csa02g01274 409 ProSiteProfiles CBS domain profile. 319 377 IPR000644 -
Csa02g01274 409 Coils Coil 86 106 - -
Csa02g01274 409 SMART cbs_1 322 370 IPR000644 -
Csa02g01274 409 SMART cbs_1 141 190 IPR000644 -
Csa02g01274 409 SMART cbs_1 37 90 IPR000644 -
Csa02g01274 409 SMART cbs_1 216 265 IPR000644 -
Csa02g01274 409 Gene3D - 3 193 IPR046342 -
Csa02g01274 409 CDD CBS_pair_SF 215 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01274 - - - csv:101215388 776.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01274 Csa-Chr2:12406841 Csa05g02423 Csa-Chr5:26237422 2.47E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g360 . . . . . . . . . . Cma02g00389 . Car02g00252 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00382 . Chy11g00369 . . . . . . . . . . Cmo02g00396 . . . . . . Cpe05g01268 . . . . . . . . . . . . . . . Csa02g01274 . Cme11g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013891 0 0 0 0 0 1 1 1 1 1 1 1 1 1 2 1 1 0 1 0 1 1 1 1 1 1 1 2 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01274 Csa_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.599923