Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01278 ATGGCCGCTGATCCTTTGACAAGTTCTAACGGCATTGCTAATGTCAATTCACCACCTGATCCACGAAGGACTTATCAAGTTGTTGTAGCTGCTACTGAAAATTTGGGTATCGGTAAGGGTGGGAAATTACCATGGAGGCTGCCTTCTGATATCAAGTTTTTTAAAAACATAACCATAACAACATCAGATCCTGGGAAAAGGAATGCAGTTCTAATGGGTCGTAAAACATGGGAGAGTCTTCCTGCTGAGCATCGACCACTACCTGGTCGCCTGAATGTTGTTCTGACTCGTTCTGGAAGTTTTGACATTGCGACTGTTGAAAATGTTATAATATGCGGTAGTATAACGTCTGCTTTGGAATTATTAGCAGCTTCTCCTTACTGTTTGTCAATAGAGAAAGTGTTTGTTATAGGTGGTGGTGAAATATTAAGGGAAGCTATGAATGCCCCTGAATGTGATGCTGTCCACATTACTGAAATTGAGACAAATGTTGAATGTGACACCTTCATACCAGCTGTTGATAAGTCGATATTTCAACCATGGTACTCATCTTTTCCTGTGGTTGAAAAAAACTTGCGATATTCGTTTAATAGTTATGTTCGTGTGAGGAGCTCAGCTGAACCCCCCATTGATCAGAACAATGGTTTGGTCTCCCATAACAAGCCTGATTTTTCTAACTTTGAAGCTAAGTTCTCTTTCCTACCTAAGGAGATTTTTGAGAGGCATGAGGAGTATTTGTACCTAAAACTTGTTCAAGAAATCATCTCAGATGGTATTCCTAAGGATGATAGAACTGGAACAGGTACTTTGTCAAAATTTGGTTGCCAGATGCGGTACAACTTGCGCAAAACTTTTCCACTGCTTACAACTAAGAAAGTATTTTGGCGAGGGGTGGTTGAAGAACTTCTTTGGTTCATTAGTGGTTCAACCAATGCGAAGGTTCTTCAGGAGAAAGGCATTCATATATGGGATGGCAACGCATCCAGAGATTACCTCGATAGTATTGGTCTAAGAGAAAGGGAGGAAGGCGACTTGGGACCTGTATATGGGTTCCAGTGGCGACACTTCGGTGCTAGGTATACGGACATGCATGCTGACTATACTGGTCAAGGATTTGATCAGTTGCTAGATGTTATTAACAAGATAAAAAATAATCCTGATGACCGGAGGATCATTCTTTCTGCATGGAATCCATCTGATCTCCAACTGATGGCACTTCCTCCTTGCCACATGTTCTCTCAGTTTTACGTTGCAAATGGGGAGTTATCATGTCAAATGTATCAGCGTTCTGCTGACATGGGCCTTGGTGTTCCATTTAATATTGCATCATACGCTCTTCTGACTTGCATGATTGCTCATGTTTGTGGTCTTGCTCGAGGCGACTTCATTCATGTGATTGGAGATGCTCATGTTTACCGTACTCATGTGAGGCCATTGCAGGAACAACTTCAGAAACTTCCCAAACCGTTCCCCATTTTGAAGATAAATCCCGAGAAGAAGGATATTGATTCTTTTGTGGCAGATGATTTTGAACTAACTGGTTATGACCCTCATGTGAAGATAGCAATGAAAATGGCAGTATAG 1584 41.54 MAADPLTSSNGIANVNSPPDPRRTYQVVVAATENLGIGKGGKLPWRLPSDIKFFKNITITTSDPGKRNAVLMGRKTWESLPAEHRPLPGRLNVVLTRSGSFDIATVENVIICGSITSALELLAASPYCLSIEKVFVIGGGEILREAMNAPECDAVHITEIETNVECDTFIPAVDKSIFQPWYSSFPVVEKNLRYSFNSYVRVRSSAEPPIDQNNGLVSHNKPDFSNFEAKFSFLPKEIFERHEEYLYLKLVQEIISDGIPKDDRTGTGTLSKFGCQMRYNLRKTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASRDYLDSIGLREREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIILSAWNPSDLQLMALPPCHMFSQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCGLARGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPILKINPEKKDIDSFVADDFELTGYDPHVKIAMKMAV* 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12434949 12442359 - CsaV3_2G014940.1 Csa02g01278 519335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01278 527 Pfam Thymidylate synthase 247 527 IPR023451 -
Csa02g01278 527 Hamap Thymidylate synthase [thyA]. 244 527 IPR000398 GO:0004799|GO:0006231
Csa02g01278 527 PANTHER THYMIDYLATE SYNTHASE 1 2 527 IPR045097 GO:0016741
Csa02g01278 527 ProSitePatterns Thymidylate synthase active site. 389 417 IPR020940 GO:0004799|GO:0006231
Csa02g01278 527 TIGRFAM thym_sym: thymidylate synthase 247 527 IPR000398 GO:0004799|GO:0006231
Csa02g01278 527 CDD DHFR 28 200 IPR001796 GO:0004146|GO:0046654
Csa02g01278 527 Pfam Dihydrofolate reductase 26 201 IPR001796 GO:0004146|GO:0046654
Csa02g01278 527 PIRSF DHFR-TS 9 527 IPR012262 GO:0004146|GO:0004799|GO:0006730
Csa02g01278 527 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 236 527 IPR036926 -
Csa02g01278 527 PRINTS Thymidylate synthase family signature 285 306 IPR000398 GO:0004799|GO:0006231
Csa02g01278 527 PRINTS Thymidylate synthase family signature 378 397 IPR000398 GO:0004799|GO:0006231
Csa02g01278 527 PRINTS Thymidylate synthase family signature 404 419 IPR000398 GO:0004799|GO:0006231
Csa02g01278 527 PRINTS Thymidylate synthase family signature 422 448 IPR000398 GO:0004799|GO:0006231
Csa02g01278 527 PRINTS Thymidylate synthase family signature 460 477 IPR000398 GO:0004799|GO:0006231
Csa02g01278 527 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 36 58 IPR017925 GO:0004146
Csa02g01278 527 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 229 527 IPR036926 -
Csa02g01278 527 CDD TS_Pyrimidine_HMase 247 480 IPR023451 -
Csa02g01278 527 SUPERFAMILY Dihydrofolate reductase-like 22 201 IPR024072 -
Csa02g01278 527 Gene3D Dihydrofolate Reductase, subunit A 9 203 IPR024072 -
Csa02g01278 527 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 24 201 IPR001796 GO:0004146|GO:0046654
Csa02g01278 527 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 2 527 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01278 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - csv:101208660 1080.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01278 Csa_Chr02 FPKM 10.346719 10.559409 16.020277 14.535236 5.485836 4.882288 5.579944 11.285062 10.985781 12.956779