Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01279 ATGGCCGCCACAAACCTCTACTCTCCTTCTCCTTCACCTTCCCTTTCCAGCACCCTCAAACACTCTCTCAACTCTAACCCTTTTCACCGTATTGCATTTCTTCCTCACAAACCCTTTCTCAAAGCTCCCCTTTCCCTAAAAGCTGTTCTTTCTCAAAACCCTTCTAAAACCCAGACCCAATTTCAGCATTGTTTCTCCAAATCCTCAGATGGGTTTCTTTATTGCGAGGGAATTAAGGTGCAGGACATCATGGAATCTGTTGATAAACGCCCTTTCTATCTTTACAGCAAACCCCAGATAACTAGAAATGTTGAAGCTTATAAAGAAGCTTTGGAAGGGCTGAATTCGATCATTGGTTATGCGATTAAGGCTAATAATAATTTGAAAGTGCTGGAGCATTTGAGGAAGTTGGGTTGTGGAGCTGTGCTTGTTAGTGGAAATGAGCTTCGTTTGGCTCTTCATGCTGGTTTTGACCCCACCAGATGTATTTTTAATGGGAATGGTAAACTTTTGGAGGATTTGGTTCTAGCTGCGGAACAAGGTGTTTTTGTCAATGTGGATAGTGAGTTTGACTTGGATAATATTGTAGCTGCTGCAAGAATTGCTAGAAAGAAAGTTAATGTTTTACTTCGTATTAATCCGGATGTGGATCCTCAGGTACATCCTTACGTTGCCACGGGTAATAAAAATTCCAAATTTGGTATTAGAAATGAAAAGTTGCAATGGTTTCTGGATGCTGTTAAGGCACATCCTGATGAACTTAAGCTTGTTGGGGCCCATTGCCATCTTGGTTCCACCATCACCAAGGTGGACATATTCAGAGATGCTGCAGTATTAATGGTCAACTACATTGACGAGATCAGAGATCAAGGTTTTGAAGTTGATTACCTAAACATTGGAGGTGGACTTGGGATAGATTACTATCATGCTGGAGCCATTCTTCCTACTCCCAGAGATCTCATTAATACGGTACGAGAGCTGGTGCTTTCACGAAATCTTAATCTAATCATTGAGCCTGGGAGATCAGTAATTGCCAATACTTGCTGTTTGGTGAATCGAGTGACGGGAGTCAAAACTAATGGGACTAAAAATTTTATTGTAATCGATGGAAGCATGGCTGAACTCATCCGCCCTAGTCTTTATGATGCTTATCAACACATAGAGTTGGTTGCTCCTACGCCACCTGATTCTGAGATCTCAACTTTTGACGTGGTTGGCCCTGTCTGTGAGTCTGCAGATTTCTTAGGGAAGCAAAGGGAACTCCCAACTCCGCCCAAGGGGGCTGGCTTGGTTGTCCACGATGCTGGTGCTTACTGCATGAGTATGGCATCTACTTACAATCTCAAGATGCGTCCTCCAGAGTACTGGGTTGAAGAAGATGGATCGGTGTCCAAAATCAGGCATGGTGAGACATTTGATGATCACCTTCGGTTCTTCGAGAATCTTTGA 1449 43.0 MAATNLYSPSPSPSLSSTLKHSLNSNPFHRIAFLPHKPFLKAPLSLKAVLSQNPSKTQTQFQHCFSKSSDGFLYCEGIKVQDIMESVDKRPFYLYSKPQITRNVEAYKEALEGLNSIIGYAIKANNNLKVLEHLRKLGCGAVLVSGNELRLALHAGFDPTRCIFNGNGKLLEDLVLAAEQGVFVNVDSEFDLDNIVAAARIARKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPDELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDEIRDQGFEVDYLNIGGGLGIDYYHAGAILPTPRDLINTVRELVLSRNLNLIIEPGRSVIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVAPTPPDSEISTFDVVGPVCESADFLGKQRELPTPPKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVSKIRHGETFDDHLRFFENL* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12444125 12448921 - CsaV3_2G014950.1 Csa02g01279 519336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01279 482 TIGRFAM lysA: diaminopimelate decarboxylase 68 476 IPR002986 GO:0008836|GO:0009089
Csa02g01279 482 Hamap Diaminopimelate decarboxylase [lysA]. 77 480 IPR002986 GO:0008836|GO:0009089
Csa02g01279 482 Gene3D Alanine racemase 97 342 IPR029066 -
Csa02g01279 482 PRINTS Diaminopimelate decarboxylase signature 138 155 IPR002986 GO:0008836|GO:0009089
Csa02g01279 482 PRINTS Diaminopimelate decarboxylase signature 226 235 IPR002986 GO:0008836|GO:0009089
Csa02g01279 482 PRINTS Diaminopimelate decarboxylase signature 363 381 IPR002986 GO:0008836|GO:0009089
Csa02g01279 482 PRINTS Diaminopimelate decarboxylase signature 446 468 IPR002986 GO:0008836|GO:0009089
Csa02g01279 482 SUPERFAMILY Alanine racemase C-terminal domain-like 321 477 IPR009006 GO:0003824
Csa02g01279 482 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 99 345 IPR022644 GO:0003824
Csa02g01279 482 PANTHER DIAMINOPIMELATE DECARBOXYLASE 55 479 - -
Csa02g01279 482 CDD PLPDE_III_DapDC 91 457 IPR002986 GO:0008836|GO:0009089
Csa02g01279 482 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 291 304 IPR022657 -
Csa02g01279 482 PANTHER DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED 55 479 - -
Csa02g01279 482 SUPERFAMILY PLP-binding barrel 90 346 IPR029066 -
Csa02g01279 482 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 78 476 IPR009006 GO:0003824
Csa02g01279 482 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 346 436 IPR022643 GO:0003824
Csa02g01279 482 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 120 138 IPR000183 GO:0003824
Csa02g01279 482 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 140 152 IPR000183 GO:0003824
Csa02g01279 482 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 253 266 IPR000183 GO:0003824
Csa02g01279 482 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 335 354 IPR000183 GO:0003824
Csa02g01279 482 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 436 449 IPR000183 GO:0003824
Csa02g01279 482 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 120 138 IPR022653 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01279 K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] - csv:101208417 962.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01279 Csa-Chr2:12444125 Csa02g01728 Csa-Chr2:16970172 1.26E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g352 . . . . . . . . . . . Cma20g00836 . Car20g00722 . . . . . . . . . . . . . . . . . . . . . Lsi10g00389 . Chy11g00364 . . . . . . . . . Sed01g0290 . Cmo20g00844 . . . . Cpe16g00254 . Bhi10g01983 Tan05g1282 Cmetu11g0387 . . . . . . . . . . . . Csa02g01279 . Cme11g00133
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011287 1 1 1 1 1 0 2 0 1 1 1 1 1 1 1 1 1 2 1 0 1 1 0 0 1 1 1 2 1 2 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01279 Csa_Chr02 FPKM 17.173542 19.142717 19.246641 19.289675 13.256044 12.737163 14.013376 33.505016 31.374432 30.993132