Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01280 ATGAGTGACACCATGTCGTCCGGCTCTCTTGACCGACCGAACAAAGGTGCCAATGAAGCTGAGATGTCCGAGGAAGAGAGGAAGACAAGGCTTGCGTCTCTTAAGCAGAGAGCAATCAATGCCTCGAACAAGTTCAGGCATTCGATGAAGAAGAGAGGTAGGAGAAACAGCAGCAGAGTGATGTCGATTTCTATTGAAGACGACATCGATGCTGAGGAATTACAGGCAGTAGATGCCTTTCGCCAAGCTCTGATATTGGAAGAACTCCTGCCTTCAAAACACGATGACCATCACATGATGCTCAGGTTCTTGAGAGCTAGAAAGTTCGACGTTGATAAGTCTAAGCAGATGTGGTCTGACATGCTTCAATGGAGGAAAGACTTTGGATCTGACACAGTAATGGAGGAGTTTGAATTCAAGGAGGTAGACGAAGTGTTGAAGTACTATCCACAAGGGCACCACGGAGTTGACAAAGATGGACGACCGGTGTACATCGAAAGACTTGGACAAGTTGATTCCACCAAGCTCTTGGAAGTCACAACCATGGATAGATATGTCAATTATCATGTCAGAGAGTTTGAGAGGACTTTTGCTTTGAAGTTCCCTGCTTGCTCCATAGCTGCAAAGAAGCACATCGATCAAAGCACAACCATCTTGGATGTCCAAGGAGTGGGACTCAAACACTTCAACAAATCTGCTAGGGAACTCATCCAGAGGCTACAGAAGATTGATGGTGACAACTACCCAGAGACTTTGAAACGAATGTTCATCATCAATGCTGGATCTGGATTCAGACTTCTATGGAACACTGTGAAATCATTCCTTGACCCAAAAACCACAGCCAAAATTAATGTTCTTGGCAATAAGTATCAGAGCAAGTTGCTTGAGATCATCGATGCCAGTGAACTTCCAGAGTTCCTTGGAGGTTCTTGCACTTGTGCCGACCAGGGTGGTTGCATGAGATCTGACAAGGGACCCTGGAAAGACCCAGAAATCGTCAAGATGGTTCAAAATGGCGAAGGAAGATGCAGAAGAAGGTCATTGTCCAATGTTGAAGAGAGAACCATTTCTGAAGATGACAACACAACAAGCACCAAGAGAAGTGGTTCATTCAACTCAGAAGCAGCTCCCGATGCCACGGCGGCAGCAGCAGCAGCAACAGAATCTTGCATGTCACCAAAGCAAGCAAAACTGACCCCTGTTTTGGAAGAAATACGTATGTCTCAAAAGCTTGGTGGTTGTGAGTATCAATATGAGAAGTTCATTCCTGTAGTGGATAAAGCTGTTGATTCAAATTGGGCACTTTCAACAGAGAAATACACTTTCTCCAAAGACCCATTCGCAGTGCATGAAAACTACAAAGTCCCAGAAGGGTTCAGCAACCAAATAGTTGGAGGAATAATGGCTTTGGTAATGGGAATAGTGACTATGGTCCGGCTGACTAGAACCATGCCAAAGAAGCTCACTGAGGCAGCCATCTATAGCAGCACCGTCTACTACGACGGTTCGATGGCAAAACATCCGGCACTACCGCCCCCCGCCGCTGTGCCTTTGAGCGACTACATGACGATGATGAAACGCATGGCTGAACTCGAAGAGAGAGTTAATGTCCTGAACATGAAGCCCGCCGCCATGCCAGCCGATAAGGAAGAAATGCTCAACATTGCTTTGGGCAAAGTCGAAACTTTGGAACAAGAATTAGAAGCAACCAAGAAGGCACTCGAAGAATCTCTTTCTCGAGAGGCAGAGCTGACCGACTACATCGAAAAGAAGAAGAAGAAGAAGAAGATGGTGAACCCATTCCGCTGGTGA 1812 46.14 MSDTMSSGSLDRPNKGANEAEMSEEERKTRLASLKQRAINASNKFRHSMKKRGRRNSSRVMSISIEDDIDAEELQAVDAFRQALILEELLPSKHDDHHMMLRFLRARKFDVDKSKQMWSDMLQWRKDFGSDTVMEEFEFKEVDEVLKYYPQGHHGVDKDGRPVYIERLGQVDSTKLLEVTTMDRYVNYHVREFERTFALKFPACSIAAKKHIDQSTTILDVQGVGLKHFNKSARELIQRLQKIDGDNYPETLKRMFIINAGSGFRLLWNTVKSFLDPKTTAKINVLGNKYQSKLLEIIDASELPEFLGGSCTCADQGGCMRSDKGPWKDPEIVKMVQNGEGRCRRRSLSNVEERTISEDDNTTSTKRSGSFNSEAAPDATAAAAAATESCMSPKQAKLTPVLEEIRMSQKLGGCEYQYEKFIPVVDKAVDSNWALSTEKYTFSKDPFAVHENYKVPEGFSNQIVGGIMALVMGIVTMVRLTRTMPKKLTEAAIYSSTVYYDGSMAKHPALPPPAAVPLSDYMTMMKRMAELEERVNVLNMKPAAMPADKEEMLNIALGKVETLEQELEATKKALEESLSREAELTDYIEKKKKKKKMVNPFRW* 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12453089 12458236 + CsaV3_2G014960.1 Csa02g01280 519337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01280 603 Gene3D - 55 128 - -
Csa02g01280 603 MobiDBLite consensus disorder prediction 17 31 - -
Csa02g01280 603 CDD SEC14 143 309 IPR001251 -
Csa02g01280 603 MobiDBLite consensus disorder prediction 344 361 - -
Csa02g01280 603 Gene3D - 129 340 IPR036865 -
Csa02g01280 603 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 19 597 - -
Csa02g01280 603 SUPERFAMILY CRAL/TRIO domain 141 337 IPR036865 -
Csa02g01280 603 PRINTS Cellular retinaldehyde-binding protein signature 99 121 - -
Csa02g01280 603 PRINTS Cellular retinaldehyde-binding protein signature 268 287 - -
Csa02g01280 603 Coils Coil 521 541 - -
Csa02g01280 603 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 141 315 IPR001251 -
Csa02g01280 603 Pfam CRAL/TRIO, N-terminal domain 93 120 IPR011074 -
Csa02g01280 603 MobiDBLite consensus disorder prediction 1 31 - -
Csa02g01280 603 MobiDBLite consensus disorder prediction 344 378 - -
Csa02g01280 603 SMART sec14_4 141 312 IPR001251 -
Csa02g01280 603 SMART CRAL_TRIO_N_2 96 121 IPR011074 -
Csa02g01280 603 Pfam CRAL/TRIO domain 147 309 IPR001251 -
Csa02g01280 603 Coils Coil 553 584 - -
Csa02g01280 603 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 19 597 - -
Csa02g01280 603 SUPERFAMILY CRAL/TRIO N-terminal domain 67 136 IPR036273 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01280 - - - csv:101214906 1161.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01280 Csa-Chr2:12453089 Csa06g03279 Csa-Chr6:27533009 0 dispersed
Csa06g03236 Csa-Chr6:27338012 Csa02g01280 Csa-Chr2:12453089 4.07E-13 dispersed
Csa02g01280 Csa-Chr2:12453089 Csa02g01281 Csa-Chr2:12460321 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g351 . . . . . . . . . . Cma02g00384 Cma20g00835 Car02g00249 Car20g00721 . . . . . . . . . . . . . . . . . Cone12ag1161 Cone8ag1210 Cone3ag1174 Cone10ag0980 Lsi10g00390 . Chy11g00363 . Blo04g00519 . . . . . . . Sed01g0289 Cmo02g00390 Cmo20g00843 . . . . Cpe16g00255 Cpe05g01273 Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa02g01280 . Cme11g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005364 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01280 Csa_Chr02 FPKM 12.868812 14.72035 8.438499 7.860929 50.132401 51.905155 53.816177 7.583938 8.723425 7.783913