Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01281 ATGTCTGGGCCATTGGATCGATTCGCTAGACCATGCTTTGAAGGGTTTTCTGGTAGTGATGAAAGAAAAGAAAGGAAATCTGACTTTGAAAATTCGGAGGATGAAAGGAGGACAAGAATTGGGTCTATAAAGAAGAAAGCTCTAAATGCATCTTCCAAATTTAAACATTCCCTCAAGAAGAAGAGCAGCAGGAGAAAAAGTGATGGTCGGGTCAGTTCTGTTTCTATTGAGGATGTTAGGGATGTTGAAGAGCTGCAGGCTGTCGATGCATTTCGTCAAGCACTAATAATGGATGAATTACTGCCAGAAAAACATGATGATTATCACATGATGTTGAGGTTTTTAAAAGCTCGGAAATTTGACATTGAAAAAGCTAAGCATATGTGGGCTGATATGCTTCAGTGGAGGAAGGAGTTTGGCGTTGACACAATAGGTGAAGAATTTGAATTCAAAGAGAAAAATGAAGTTCTGAGGTACTATCCTCATGGCTATCATGGGGTGGATAAAGAAGGTAGACCTGTTTACATTGAAAGGTTGGGGAAAGTGGATCCAAACAAACTTATGCAAGTGACGACTATGGATCGATATATAAAGTACCACGTACAGGAGTTTGAGAAAAGTTTTGCTATCAAGTTTCCTGCTTGTTCAATTGCTGCAAAGAGGCACATAGATTCAAGTACCACAATCTTAGATGTCCAAGGCGTGGGTCTCAAGAACTTCACGAAGTCTGCTAGGGAACTCGTCATGCGGCTACAGAAAGTTGATGGTGACAATTACCCAGAAACTCTCAGCCAAATGTACATTATCAATGCTGGTCCTGGATTTCGGATGCTATGGAACACAGTGAAGTCTTTCCTTGACCCTCGAACAACATCTAAAATCCATGTTCTCGGGAACAAGTACCAAAACAAATTACTTGAAATAATTGATTCCAGTGAGTTGCCGGAATTTCTAGGGGGAAGTTGTACATGTGCAGATATGGGGGGATGCCTTCGTTCAGACAAGGGGCCATGGAGAAACCCAGAAATTTTGAAGATGATTCTTAATGGTGAAGCACGACGTGCCAGACAGGTTGTTAAAGTTCTAAATAGTGAAGGAAAGGTTGTTGCGTATGCTAAGCCACATTACCCAATGGTGAAAGGCAGTGATACATCAACGGCTGAGTCCGGATCTGAAGCTGAAGACATCGCTTCTCCTAAAGCAATGAAGAGCTATTCTCATCTTCGGCTGACTCCTGTTCGAGAAGAAGCAAGAGTTGGTGGGAAAGGAGGTTTTGCCGCTAACTTTTCTGGGTATGATGAATATGTTCCCATGGTCGACAAAGCTGTTGATTCTGGATGGAAAAAGCAAGTTTCACTCCAACGACCTAGTTCCTCCAAAGGGGCTCCACTGCCAAACACTGAAAAAGCACCCGAAGCACTTCATTCTCGAATGTTGGTAGTATTTATGGGATTCTTCATAGCCATTTTTGCTCTTCTCCGTTCACTGGCATTCCAGATAAGTGGGAAGAAATTGTCTATTGGTAGTCAAAACACTGCAGAATTATCATCCGCCGATAAAACAGCCACTGAGGAGAATCGCCCCCCTACGCCAATTGCTAAATTTACAGAAGCAGAACTCCTCTCTAATTTGATGAAGAGGCTGGGTGAGCTGGAGGAGAAGGTCGACACGCTCCAATCAAAACCATCTGAAATGCCATATGAGAAAGAGGAACTGTTGAATGCTGCTGTCTGCCGTGTTGATGCCTTGGAAGCAGAGCTGATTGCTACCAAGAAGGCTTTGCATGAAGCATTGATGAGGCAAGAAGAACTACTAGCTTACATCGATAGCCAAGAGGAAGCAAAGTTGCGGAAAAAGAAATTTTGCTGGTAA 1872 42.84 MSGPLDRFARPCFEGFSGSDERKERKSDFENSEDERRTRIGSIKKKALNASSKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQALIMDELLPEKHDDYHMMLRFLKARKFDIEKAKHMWADMLQWRKEFGVDTIGEEFEFKEKNEVLRYYPHGYHGVDKEGRPVYIERLGKVDPNKLMQVTTMDRYIKYHVQEFEKSFAIKFPACSIAAKRHIDSSTTILDVQGVGLKNFTKSARELVMRLQKVDGDNYPETLSQMYIINAGPGFRMLWNTVKSFLDPRTTSKIHVLGNKYQNKLLEIIDSSELPEFLGGSCTCADMGGCLRSDKGPWRNPEILKMILNGEARRARQVVKVLNSEGKVVAYAKPHYPMVKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREEARVGGKGGFAANFSGYDEYVPMVDKAVDSGWKKQVSLQRPSSSKGAPLPNTEKAPEALHSRMLVVFMGFFIAIFALLRSLAFQISGKKLSIGSQNTAELSSADKTATEENRPPTPIAKFTEAELLSNLMKRLGELEEKVDTLQSKPSEMPYEKEELLNAAVCRVDALEAELIATKKALHEALMRQEELLAYIDSQEEAKLRKKKFCW* 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12460321 12466969 - CsaV3_2G014970.1 Csa02g01281 519338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01281 623 MobiDBLite consensus disorder prediction 16 42 - -
Csa02g01281 623 Pfam CRAL/TRIO domain 158 320 IPR001251 -
Csa02g01281 623 Pfam CRAL/TRIO, N-terminal domain 103 131 IPR011074 -
Csa02g01281 623 Coils Coil 580 600 - -
Csa02g01281 623 CDD SEC14 156 320 IPR001251 -
Csa02g01281 623 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 621 - -
Csa02g01281 623 SMART sec14_4 152 323 IPR001251 -
Csa02g01281 623 MobiDBLite consensus disorder prediction 1 42 - -
Csa02g01281 623 Gene3D - 42 139 - -
Csa02g01281 623 SUPERFAMILY CRAL/TRIO N-terminal domain 82 147 IPR036273 -
Csa02g01281 623 Gene3D - 140 351 IPR036865 -
Csa02g01281 623 Coils Coil 541 561 - -
Csa02g01281 623 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Csa02g01281 623 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8-LIKE 3 621 - -
Csa02g01281 623 MobiDBLite consensus disorder prediction 51 70 - -
Csa02g01281 623 SUPERFAMILY CRAL/TRIO domain 154 345 IPR036865 -
Csa02g01281 623 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Csa02g01281 623 MobiDBLite consensus disorder prediction 51 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01281 - - - csv:101208172 1212.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01281 Csa-Chr2:12460321 Csa06g03279 Csa-Chr6:27533009 0 dispersed
Csa05g03234 Csa-Chr5:31860476 Csa02g01281 Csa-Chr2:12460321 6.23E-14 dispersed
Csa06g01504 Csa-Chr6:12693631 Csa02g01281 Csa-Chr2:12460321 1.41E-07 dispersed
Csa02g01280 Csa-Chr2:12453089 Csa02g01281 Csa-Chr2:12460321 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g350 . . . . . . . . . . Cma02g00383 Cma20g00834 Car02g00248 Car20g00720 . . . . . . . . . . . . . . . . . Cone12ag1162 Cone8ag1211 Cone3ag1175 Cone10ag0981 Lsi10g00391 . Chy11g00362 Cme01g01117 Blo04g00520 . . . . . . . Sed01g0288 Cmo02g00389 Cmo20g00842 . . . . Cpe16g00256 Cpe05g01274 Bhi10g01981 Tan05g1280 Cmetu11g2218 . Hepe08g0999 . . . . . . . . . . Csa02g01281 . Cme11g00135
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004434 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01281 Csa_Chr02 FPKM 2.604059 2.608847 4.15429 5.740583 10.34996 9.910993 10.005751 1.171644 1.484084 1.256634