Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01292 ATGGCAACTTACTTCTCTAGTTCGAATAACGAAAGGGACACTACTCCCATCCTCTATTCAAGGGGATCTTTGCTCGGTTCGTATGAAGAAACAACAATTCTTCCACGAAATATGATGATGCATGTAAATTCTGGGACATACATGGATTCGTTGCCATCGCAGGCACAAAATGGTTGTGGTCAGATCACGTCGGTTGGAGCAGCAGGAACTACCCAACAGCAGCAAGAGTTTTTATCAAATCTTGGTGGCTCACAGATTGCTGAGCATGATTTCAATACATGGAGAGAGGACCGGAGTGAAATGCTTGGCGCAAACTCGATGCGTGGCCCTACCAATGTTCTTCATGGTGGGCAGAATTTGCAGGGCCAGGGGTTATCCCTTACGCTCAGTACACAAATCCCATCTGCAATCCAAATCCCTTCAATCCCCTATAGAAATTCAGATATGGGTTTAACTTCATTCCTGAGTCCTAATCCGACTAATTCAGGTGAGGATGGCTGCAGAAATGGTGCTTCTAGAGACGAACAGTTGAGAAATGGAGAAAACTTGCCACCTAATTTTCAAGAATTGGCTAAGGGTGAAATATCTCAATACAGCATGTCTACTATTGCAAGAACTATGCCCAATTCAAAGTACCTCAAGGCAGCTCAACAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGGCCTAATAATGATAGAAACCAGAGTTCACATGAGCATGAAACTAGAAGTGCAAAGAACGGTGACACAGGAACCAAAAATGACAGTTCGATGCTCACTGCAAGTGGAACATCTTCAAACCCTCAAGAAACTGGGAGCAATTCAACGTGTGAGCTCTCTCATGCCGAAAAGCAAGATTTGCAGAACAAGTTGACTAAGCTCTTATACATGCTGGATGAGGTTGATAGAAGGTACAATCAGTACTATCATCAGATGCAGATTGTGGTGTCATCCTTCGATGTGATAGCTGGATGTGGGGCATCTAAGCCATATACTGCACTTGCACTCCAGACCATATCCCGACATTTTCGATGCTTGCGGGATGCAATAGCTGGTCAAGTCAGAGCTACCCGTAAAAGTCTGGGAGAGCATGAGAATTCTGGAAGTGACAAGGGAGTTGGAATCACTCGTCTCCGATATGTGGACCAACAGTTAAGGCAACAGAGGGCACTTCAGCAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCAATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCGAAGGATTCTGATAAGATCATGCTGGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTTTCTAATTGGTTTATCAATGCACGCGTACGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAAATAGGCAGTGTAGACATGGACTCTATATCATCATCTGAAAATGCTGGGAAGGCAACAAAAGGAGATAACAAGACCTTTGACGATGATAAAGAGGAGGATCTACAACAAAGTGCAAGTTCAACAGCCACCGAAAGATGTAGCGCTGGAGATATTATCGACTTAAAATCTGATCAAGTCTCTAATCTCGGAAATTCATGTTCCAACAGAGTAGCCAGTTTCCAAAATGGAGCTCACATTGAAGCTCGAAACGAGCTGGCAAAGCCAAACGATGAGTTAAGGCCTAATGTAAATAACTCTAGTTTCTTTCCTGATGCAATTGTCCACTCTCAGGGTGAGAGTGACAGATTTATGGCTGCTGCCGCTGCCTATCACATGTCTGAATTGGGAAGATTCGGGACGGTTGGCGGGGTGTCGCTTACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGCCTACCATTGCCTGCTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGACGATATGTACAATGCCGCAGCGTCTTCCCTCGGGGAAACGGTGCATTTTGAATGCGTAAATAGTGGGAATCCACAACCAAGGTTTGGCCCTTCCCATCTTTATCATGATTTTGTTGTGTAA 2046 45.21 MATYFSSSNNERDTTPILYSRGSLLGSYEETTILPRNMMMHVNSGTYMDSLPSQAQNGCGQITSVGAAGTTQQQQEFLSNLGGSQIAEHDFNTWREDRSEMLGANSMRGPTNVLHGGQNLQGQGLSLTLSTQIPSAIQIPSIPYRNSDMGLTSFLSPNPTNSGEDGCRNGASRDEQLRNGENLPPNFQELAKGEISQYSMSTIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNDRNQSSHEHETRSAKNGDTGTKNDSSMLTASGTSSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGSDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSVDMDSISSSENAGKATKGDNKTFDDDKEEDLQQSASSTATERCSAGDIIDLKSDQVSNLGNSCSNRVASFQNGAHIEARNELAKPNDELRPNVNNSSFFPDAIVHSQGESDRFMAAAAAYHMSELGRFGTVGGVSLTLGLQHCEGGGLPLPAGTHHGFAAMRGDDMYNAAASSLGETVHFECVNSGNPQPRFGPSHLYHDFVV* 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12571370 12574220 - CsaV3_2G015080.1 Csa02g01292 519349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01292 681 MobiDBLite consensus disorder prediction 150 167 - -
Csa02g01292 681 ProSiteProfiles 'Homeobox' domain profile. 403 466 IPR001356 GO:0003677
Csa02g01292 681 MobiDBLite consensus disorder prediction 483 517 - -
Csa02g01292 681 MobiDBLite consensus disorder prediction 231 285 - -
Csa02g01292 681 Pfam Homeobox KN domain 423 462 IPR008422 GO:0003677|GO:0006355
Csa02g01292 681 Gene3D - 401 479 - -
Csa02g01292 681 SMART HOX_1 406 470 IPR001356 GO:0003677
Csa02g01292 681 SUPERFAMILY Homeodomain-like 407 474 IPR009057 -
Csa02g01292 681 MobiDBLite consensus disorder prediction 495 510 - -
Csa02g01292 681 CDD homeodomain 406 467 IPR001356 GO:0003677
Csa02g01292 681 SMART prehox3 201 356 IPR006563 -
Csa02g01292 681 MobiDBLite consensus disorder prediction 253 285 - -
Csa02g01292 681 MobiDBLite consensus disorder prediction 231 252 - -
Csa02g01292 681 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 70 629 - -
Csa02g01292 681 MobiDBLite consensus disorder prediction 150 186 - -
Csa02g01292 681 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 70 629 - -
Csa02g01292 681 Pfam Associated with HOX 208 355 IPR006563 -
Csa02g01292 681 Coils Coil 288 308 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01292 Csa07g00194 CCT
Csa02g01292 Csa07g00194 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01292 Csa-Chr2:12571370 Csa07g02163 Csa-Chr7:20537174 4.79E-112 dispersed
Csa02g01292 Csa-Chr2:12571370 Csa03g03494 Csa-Chr3:31283814 5.10E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30926 PF07526 POX 3.20E-51 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01292 - - csv:101205137 1328.15