Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01296 ATGAATTTTGTGACAATGGCAGAGCAACGGACTGAGGATGGTAGCTCAATGAAGGAAGGAGAAGAGGTGGAGAAGGAGAAATCGAAGAAGAATGTAGATCCAGAACTTCTCAGCTGCTTGCTTCAACCTATGAGTATTGGTGTTGATCCGGATTATATTGGGATTCGTCGTCTCTTGCTTTATCGGAAGGCTGAAGCCGCGATTTTCCGTCGTAAAGACTGGAGGTGCAATGGAAAAGGTTATGTGGCATTCCGCAATTTCATACGCCGGCCAAGGAATTGGGAAAGCTCACGTTTACCAAGTCTTCAAAGCACCCCTGGAAACAGTGGAAGATGGGTTCCTCCTCAAAGTCCACTCTCTCTCTTGCATGAGGTGGAGAGTTGGACTTCTAGCAAGGACTTGCAAAGTCACCGAAGATCAAGTTTTAGCTCAAGTGCAAGTGATAATAGTCAGCTGCAGACTCGTAGAGTTGAATTTGCATATTCTTTTGTAGGAATGCATTGTATATTTGATCAATGCAAAGCCGCTGTCATGGTTGTGAAGTTTGGACACATGAGCTCTGATCTATTAGCATATGGGGCATCGGATGGGACCTTGACTGTATGCAATGTCTCTGAACCATCTTCATCTGTCAAGCAGTTGCTGGGCCATTCAAAAGACGTCACAGACTTCGATTTTTCGTCGAATAATCAGTACATTGCATCATCATCCATGGACAAAACCGTTAGAGTATGGGAGATATCAAAAGGACTTTGCATTAGAGTAATCTATGGAGTATCTTCGCAGTTGTGTATACGTTTTCATCCGGTAAATAATAACTTCCTCTCAGTTGGCAATGCAAATAAGGAAATCACGGTGTTTAATTTCAGCACGGGGAGGATTGTGACAAAATTAGTTCTTGATAGTGAGGTTACCTCCATGGATCATGATCACACTGGTCAGCTCCTTTTCTGTGGGGACGCAAATGGGTATGTTTACTCTGTGAGCATGAACTCTCATACAGGAGCATTAACCCGTACTCACCGCCAGTGGTGTAGTAGTCGGCGAAAATCTCCCGTATCCACTGTACAATATCGAAGCTTCTCTCTGCTGGCCAGGAGCCCTGTATTGCTAACTTGCACTCAAGATGGAAACTTGTCTTTCTTCAGTATTGCTTTGGAAGTTCAAGGATATTTGACCCTCCGCTGCTCACTCAAATTAGCTCCAAGGATACATAGCATCCGTGCTTCATTCTGCCCCCTACTTTCGCTTGAAAAAGGAGAGTACATTGTTGCAGGAAGTGAGGATTCAAATGTCTACTTCTATGATTTAACACGACCTAAACATACTTGTGTCAACAAGCTACAGGGCCACCGGTTTCCAGTTATCGGGGTTGCCTGGAACCATGGGGAGAACCTTTTGGCTTCATCAGATTTTTATGGGACGGTAATTGTATGGAAGAGATCAAAGACGAGTTAG 1458 44.17 MNFVTMAEQRTEDGSSMKEGEEVEKEKSKKNVDPELLSCLLQPMSIGVDPDYIGIRRLLLYRKAEAAIFRRKDWRCNGKGYVAFRNFIRRPRNWESSRLPSLQSTPGNSGRWVPPQSPLSLLHEVESWTSSKDLQSHRRSSFSSSASDNSQLQTRRVEFAYSFVGMHCIFDQCKAAVMVVKFGHMSSDLLAYGASDGTLTVCNVSEPSSSVKQLLGHSKDVTDFDFSSNNQYIASSSMDKTVRVWEISKGLCIRVIYGVSSQLCIRFHPVNNNFLSVGNANKEITVFNFSTGRIVTKLVLDSEVTSMDHDHTGQLLFCGDANGYVYSVSMNSHTGALTRTHRQWCSSRRKSPVSTVQYRSFSLLARSPVLLTCTQDGNLSFFSIALEVQGYLTLRCSLKLAPRIHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLTRPKHTCVNKLQGHRFPVIGVAWNHGENLLASSDFYGTVIVWKRSKTS* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12604165 12614634 - CsaV3_2G015120.1 Csa02g01296 519353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01296 485 Pfam WD domain, G-beta repeat 211 245 IPR001680 GO:0005515
Csa02g01296 485 Pfam WD domain, G-beta repeat 444 480 IPR001680 GO:0005515
Csa02g01296 485 MobiDBLite consensus disorder prediction 12 28 - -
Csa02g01296 485 Gene3D - 407 485 IPR015943 GO:0005515
Csa02g01296 485 MobiDBLite consensus disorder prediction 1 28 - -
Csa02g01296 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 250 - -
Csa02g01296 485 PANTHER WD REPEAT PROTEIN 26-RELATED 24 484 - -
Csa02g01296 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 485 IPR001680 GO:0005515
Csa02g01296 485 ProSitePatterns Trp-Asp (WD) repeats signature. 233 247 IPR019775 -
Csa02g01296 485 SMART WD40_4 207 246 IPR001680 GO:0005515
Csa02g01296 485 SMART WD40_4 163 203 IPR001680 GO:0005515
Csa02g01296 485 SMART WD40_4 400 436 IPR001680 GO:0005515
Csa02g01296 485 SMART WD40_4 249 288 IPR001680 GO:0005515
Csa02g01296 485 SMART WD40_4 291 329 IPR001680 GO:0005515
Csa02g01296 485 SMART WD40_4 441 480 IPR001680 GO:0005515
Csa02g01296 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 255 IPR001680 GO:0005515
Csa02g01296 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 448 485 - -
Csa02g01296 485 PANTHER WD REPEAT-CONTAINING PROTEIN 13 24 484 - -
Csa02g01296 485 Gene3D - 130 406 IPR015943 GO:0005515
Csa02g01296 485 SUPERFAMILY WD40 repeat-like 175 482 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01296 K24739 WDR13; WD repeat-containing protein 13 - csv:101204649 942.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01296 Csa-Chr2:12604165 Csa06g03074 Csa-Chr6:26388096 3.09E-20 dispersed
Csa02g01296 Csa-Chr2:12604165 Csa07g01715 Csa-Chr7:17626903 4.69E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g9 . Blo15g00678 Bda06g00950 . . . . . . . . Cma20g00821 . Car20g00708 . . . . . . . . . . . . . . . . . . . Cone3ag1222 Cone10ag1107 Lsi10g00404 . Chy11g00347 . . . . . . . . . Sed05g3536 . Cmo20g00830 . . . . Cpe16g00266 . Bhi10g01963 Tan05g1257 Cmetu11g1123 . Hepe08g0987 . . . . . . . . . . Csa02g01296 . Cme11g00157
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010476 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01296 Csa_Chr02 FPKM 15.338421 15.262673 17.761179 18.220963 19.647234 16.114859 19.438316 32.813438 32.3922 32.822689