Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01300 ATGAAGATCCGTTGTGATGTTTGCGATAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGATGAAGCCGCCCTCTGCGCCCCCTGTGACCGCCAAATCCACCGAGCAAACAAGCTCGCCAGTCAACACAACCGTTTCTCTCTCCTCCATTCCTCCGCCTCCGCCTCCGCCGCTGCTACTTCAGAGCCGTTATGCGATATCTGCCAAATCCGGCGAGCGTTTCTGTTCTGTCGGGAAGACAGAGCAATCCTCTGTAGAGAATGCGATATCCCAATTCACGACACCAGCGAACACACCCAGAAGCACAGCCGGTTTCTTCTCACCGGCGTGAAGGTCTCCCCGTCGCCGGCGACTTCTTCTTCTTGTTCCTCCTCCGTGGCAAGCAGCGGCGAGGAAAATGAAGGGTCGTTGAAGAAATGCTCGAGGAAGAGAAGTAAAATGGGGTTTAGCAAAGGATTGGTAATTTCAGAGTATTTGGAGAGTTTGCCTGGTTGGTGTGTTGAGGAGTTTCTTGATTCTTCATCTTCCCCACATCTTTTTTTGTAA 543 51.57 MKIRCDVCDKEEASVFCPSDEAALCAPCDRQIHRANKLASQHNRFSLLHSSASASAAATSEPLCDICQIRRAFLFCREDRAILCRECDIPIHDTSEHTQKHSRFLLTGVKVSPSPATSSSCSSSVASSGEENEGSLKKCSRKRSKMGFSKGLVISEYLESLPGWCVEEFLDSSSSPHLFL* 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12644521 12645374 + CsaV3_2G015160.1 Csa02g01300 519357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01300 180 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 175 - -
Csa02g01300 180 CDD Bbox1_BBX-like 63 106 - -
Csa02g01300 180 Pfam B-box zinc finger 61 102 IPR000315 GO:0008270
Csa02g01300 180 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Csa02g01300 180 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Csa02g01300 180 Gene3D Classic Zinc Finger 1 106 - -
Csa02g01300 180 CDD Bbox1_BBX-like 5 47 - -
Csa02g01300 180 MobiDBLite consensus disorder prediction 111 132 - -
Csa02g01300 180 ProSiteProfiles Zinc finger B-box type profile. 59 106 IPR000315 GO:0008270
Csa02g01300 180 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 175 - -
Csa02g01300 180 SMART bboxneu5 59 106 IPR000315 GO:0008270
Csa02g01300 180 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01300 Csa07g00027 CCT
Csa02g01300 Csa07g00027 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01300 Csa-Chr2:12644521 Csa04g00821 Csa-Chr4:5753161 3.11E-38 dispersed
Csa02g01300 Csa-Chr2:12644521 Csa02g02104 Csa-Chr2:19152113 1.05E-49 wgd
Csa02g01300 Csa-Chr2:12644521 Csa07g00027 Csa-Chr7:395757 2.33E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30927 PF00643 zf-B_box 9.20E-07 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01300 - - csv:101207039 330.102