Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01303 ATGCCTTTCAAAATCCTCCACTCTTCTTCTTCTTCATTCGTTCCTCGTTTCCATTGCCCCAATATTCTCAAACCATTCTCTCCCTCTTCCTTTCCCCTCACTCGTCCATTTCTCTCCTCCCCCACCATTTCTTTTCCTTCCTCTTCCATTTCCTCCCCTTCACCTCTCCATTTCTCGTCGCGGAATCGCCGCCGATTCCCGGTTCTTCGCGTTGAGATTGAGAGAGAAATTGGCATTGAAGTACAAAAAGATGAACAAGTATTGGGGATTGAAGGAGAAGAATTGGGGAACCAGGGGTTGTTGAATCAGTTGAAGGAGATTGTTACGTTTACTGGGCCTGCTATTGGATTGTGGATTTGTGGACCTTTGATGAGTCTCATTGACACTGCGGTTATTGGCCAGGGAAGCGCTGTTGAGCTTGCTGCTTTAGGCCCTGCGACAGTTTTATGTGATTATACGAGCTATGTGTTTATGTTTCTTAGTATCGCTACTTCAAACATGGTAGCCACGGCCCTTGCCAAACAGGATAAAAACGAAGTGCAGCATCATATATCTGTATTGCTGTTTGTTGGATTAATGGCTGGCTTCTTGATGCTCTTAAGTACCAAACTATTGGGTTCGGTGGCCCTAACTGCTTTTGTGGGGGCAAAGAATGCAGACATCATACCTGCAGCAAATACCTACATTCAGATTCGAGGTTTGGCATGGCCCGCAATTCTTACTGGCTGGGTCGCTCAAAGTGCAAGTCTTGGCATGAAAGATTCCTGGGGACCTTTGAAGGCTTTGGCAGTTGCGAGTATTGTAAATGGTATAGGTGATGTGGTCCTATGCATGTTTTTAGGATATGGGATTGCTGGTGCTGCGTGGGCAACCATGGCATCACAGATTATTGCAGCTTATATGATGATAGAAGCACTGAATAAGAAAGGATACGACGGATATTCTCTATCAGTTCCCTCGTCTGGTGAATTTTTGTCAATACTTGGCCTTGCTGCTCCTGTATTTCTAACAATGATGTCAAAGGTGGTTTTTTATTCTCTCCTCATTTATTACGCTACATCTATGGGCACACACACCATGGCTGCTCATCAGGTTATGATTCAAACATTTTGTATGTGTACCGTTTGGGGTGAACCTCTATCTCAAACTGCTCAATCATTTATGCCTGGGTTGATAAATGGAGTGAATCGTAGTTTGGATAAGGCTTGGATGTTGCTAAAGTCACTCATGATCATAGGAGCTATATTTGGTTTGGTATTAGGGACTATTGGAACATCAGTTCCTTGGTTGTTCCCCAATCTCTTCACACCCGAAGAGAAGATTATTCAGGAGATGCATAAAGTGTTGATTCCATATTTCTTGGCTTTAGTCATAACACCCCCGACTCATAGCTTAGAAGGGACATTATTGGCTGGACGAGACCTAAAATATATTAGTTTGTCAATGACTGGCTGTCTTTCTCTTGGTGCCCTCGTATTGTTGATTATTAGCACTAGAGGTTATGGTTTGACAGGCTGCTGGTATGCCTTGGTTGGATTCCAATGGGCTCGATTTCTTAGCGCTCTTCGGCGCATCCTCTCTCCTAATGGAATACTTAGCAGTGATCTAAGCCACAATGAACTAGAAAAGCAAAAGGCTACATAG 1644 43.86 MPFKILHSSSSSFVPRFHCPNILKPFSPSSFPLTRPFLSSPTISFPSSSISSPSPLHFSSRNRRRFPVLRVEIEREIGIEVQKDEQVLGIEGEELGNQGLLNQLKEIVTFTGPAIGLWICGPLMSLIDTAVIGQGSAVELAALGPATVLCDYTSYVFMFLSIATSNMVATALAKQDKNEVQHHISVLLFVGLMAGFLMLLSTKLLGSVALTAFVGAKNADIIPAANTYIQIRGLAWPAILTGWVAQSASLGMKDSWGPLKALAVASIVNGIGDVVLCMFLGYGIAGAAWATMASQIIAAYMMIEALNKKGYDGYSLSVPSSGEFLSILGLAAPVFLTMMSKVVFYSLLIYYATSMGTHTMAAHQVMIQTFCMCTVWGEPLSQTAQSFMPGLINGVNRSLDKAWMLLKSLMIIGAIFGLVLGTIGTSVPWLFPNLFTPEEKIIQEMHKVLIPYFLALVITPPTHSLEGTLLAGRDLKYISLSMTGCLSLGALVLLIISTRGYGLTGCWYALVGFQWARFLSALRRILSPNGILSSDLSHNELEKQKAT* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12674408 12681961 - CsaV3_2G015190.1 Csa02g01303 519360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01303 547 CDD MATE_DinF_like 105 527 IPR044644 -
Csa02g01303 547 Pfam MatE 117 271 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Csa02g01303 547 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 76 537 - -
Csa02g01303 547 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 76 537 IPR044644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01303 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101206241 1044.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01303 Csa-Chr2:12674408 Csa04g01661 Csa-Chr4:15924509 1.25E-17 dispersed
Csa02g01303 Csa-Chr2:12674408 Csa02g01304 Csa-Chr2:12682159 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g23 . Blo15g00670 . . . . . Bma12g00542 . . Cma02g00367 Cma20g00814 Car02g00235 Car20g00698 . . . . . . . . . . . . . . . . . . . Cone3ag1216 Cone10ag1100 . . Chy11g00340 . . . . . Bpe15g00846 . . . Sed01g0267 Cmo02g00372 Cmo20g00822 . . . . . . Bhi10g01948 Tan05g1245 . . Hepe08g0980 . . . . . . . . . . Csa02g01303 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002254 2 5 2 3 2 2 2 2 2 1 1 2 2 1 2 3 2 2 2 2 2 1 2 2 2 1 1 4 4 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01303 Csa_Chr02 FPKM 4.554789 6.137649 15.957689 16.778763 22.908363 16.636896 19.325315 0.109438 0.139118 0.072718