Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01304 ATGGCGGATCTTTCACTCTCTCTCCTTCCCTTCAGTTTTCACCCGCCAAAAATGCCTTTCAAATTCCTCCATTCCCCTTCACCTTCTTCAATCATTCCTCAAACCCATATCCCCAAATTCCCCAATCCTCTCTCTCACTCTCGCCCTTCCTTCTCCTTCTCCTTCACCCCCACCCTCCCCTTTCCTTCCCCTTCCCCCCCTTTACCCCTCAATGTATCGTCGCCGATTACCCGCTGTTTCGCGCTTCCTCACGATGATCACGCGCGGGAAGTCAGCAGCGCGGAGAGTGCGAGCGAAACCGACAATGGAGTACAGGGAAATGAGCAGTTATTGGCGACTGGAATTAAAGATTTGGAGAGCCAAGGGTTGGTAAATCAGATGAAGGAGATTGTAACGTTTACTGGACCTGCTATTGGGTTGTGGATTTGTGGACCAATGATGAGTCTCATTGACACTGCGGTTATAGGCCAAGGGAGCGCCGTTGAGCTTGCTGCTTTGGGCCCAGCAACAGTTTTATGTGATTATACGAGCTATGTGTTCATGTTTCTTAGTATCGCAACTTCAAATATGGTAGCTACGGCCCTTGCTAAACAGGATAAGAACGAAGTGCAGCATCACATATCTGTATTGCTATTTGTTGGGCTGATGTCTGGTTTGTTGATGCTCTTAGTTACCAAACTATTGGGTTCATTGGCGCTAACTGCTTTCGTGGGGACAAAGAATCCAGGCATCATACCTGCAGCAAACACGTATATGCAGATTCGAGGTTTGGCATGGCCTGCAATTCTCGTTGGATGGGTTGCTCAGAGTGCAAGTCTTGGCATGAAAGATTCCTGGGGACCTCTGAAAGCGCTGGCAGTTGCGAGTATTGTAAATGGCATGGGTGATGTGATTCTATGCATGGTTTTAGGATATGGTATTGCTGGTGCTGCATGGGCAACTATGGCATCACAGGTTATTGCAGCTTATATGATGATAGAGCAACTAAACAAGAAAGGATATAGCGGATATTCTCTATCTATTCCCTCTCCCAGTGAATTTTTGTCAATACTTGGACTTGCTGCTCCTGTATTTATAACACTGATGTCAAAGATAGTGTTTTATACTCTCCTCATCTATCATGCTACGTCTATAGGCACATTCACCATGGCTGCTCATCAGGTCATGAGTCAAACATTCTACATGTGTAGCGTATTGGGTGAGCCTCTTTCTCAAACTGCCCAATCATTCATGCCTGGATTCATACATGGAGTAAATCGTAGTTTGGATAAGGCTCGGATGCTACTCAAGTCGCTCTTGATCATAGGAGGTATTTTTGGTTTGGTATTAGGGACTATTGGAACGTTAGTTCCTTGGTTGTTCCCTAATCTCTTTACACCTGAAGTGAAGATTATTCAAGAGATGCATAAAGTGTTGATTCCATATTTCTTGGCCCTACTCATAATGCCCGCAACCCTTTGCTTAGAAGGGACGTTATTGGCTGGACGAGACCTAAAGTTTATTAGTTTATCAATGTGTGGATGCCTTTCTTTTGGTGCCCTTCTATTACTGTTTGTAAACAGTAGGGGTTATGGTTTGGCAGGCTGCTGGTGCGCCCTCGTCGGATTTCAATGGGCTCGGTTTTTTAACGCTCTTCGGCGCGTCCTCTCTCCCAATGGAGTGCTTTACTCTAGTGATGTAAGCCATTATGAAGTGGTAAAGCAAAAGGCTGCATAG 1716 45.63 MADLSLSLLPFSFHPPKMPFKFLHSPSPSSIIPQTHIPKFPNPLSHSRPSFSFSFTPTLPFPSPSPPLPLNVSSPITRCFALPHDDHAREVSSAESASETDNGVQGNEQLLATGIKDLESQGLVNQMKEIVTFTGPAIGLWICGPMMSLIDTAVIGQGSAVELAALGPATVLCDYTSYVFMFLSIATSNMVATALAKQDKNEVQHHISVLLFVGLMSGLLMLLVTKLLGSLALTAFVGTKNPGIIPAANTYMQIRGLAWPAILVGWVAQSASLGMKDSWGPLKALAVASIVNGMGDVILCMVLGYGIAGAAWATMASQVIAAYMMIEQLNKKGYSGYSLSIPSPSEFLSILGLAAPVFITLMSKIVFYTLLIYHATSIGTFTMAAHQVMSQTFYMCSVLGEPLSQTAQSFMPGFIHGVNRSLDKARMLLKSLLIIGGIFGLVLGTIGTLVPWLFPNLFTPEVKIIQEMHKVLIPYFLALLIMPATLCLEGTLLAGRDLKFISLSMCGCLSFGALLLLFVNSRGYGLAGCWCALVGFQWARFFNALRRVLSPNGVLYSSDVSHYEVVKQKAA* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12682159 12689244 - CsaV3_2G015200.1 Csa02g01304 519361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01304 571 CDD MATE_DinF_like 126 542 IPR044644 -
Csa02g01304 571 Pfam MatE 139 294 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Csa02g01304 571 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 77 560 - -
Csa02g01304 571 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 77 560 IPR044644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01304 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101207199 1007.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01304 Csa-Chr2:12682159 Csa04g01417 Csa-Chr4:14188211 4.05E-17 dispersed
Csa02g01303 Csa-Chr2:12674408 Csa02g01304 Csa-Chr2:12682159 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g24 . . Bda06g00961 . . . . Bma12g00541 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00412 . . . Blo04g00535 . . Bda14g00576 . . Bma03g00570 . Sed01g0265 Cmo02g00371 . . . . . Cpe16g00272 Cpe05g01288 Bhi10g01946 Tan05g1243 Cmetu11g1869 . Hepe08g0979 . . . . . . . . . . Csa02g01304 . Cme11g00165
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002254 2 5 2 3 2 2 2 2 2 1 1 2 2 1 2 3 2 2 2 2 2 1 2 2 2 1 1 4 4 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01304 Csa_Chr02 FPKM 3.637137 2.876048 55.265335 53.132221 13.490377 12.004767 11.20811 12.168588 11.745608 10.261368