Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01318 ATGGCGGTCGCCACCACTCTCAACCTCCCTTCTCTTTCTTCCTCTTCATCTCTCTCTCATCCCACCCCCACTCTTCAAACCCATATTTCCGTTTCCTCTAAAACCCTCCAAAAATCCCACTTTCCCTCTTCCTTTTCTCTTCCCAATCCTCACAAACCCCTCTTCCTCTCCTCCGCCTCCAAATCCCCTATCTCCGACTTCTTCTCCGGTCACGACGAAAACGATTCTTCCGACGAAAAACTCCGCGAGGAGTGCGGTGTTGTTGGAATCTACGGCGACCCAGAAGCCTCTCGTCTCTGTTATTTAGCACTTCACGCTCTCCAACACCGTGGCCAAGAAGGCGCCGGAATCGTTGCCGTCAATGAAAACGTTCTCCAGTCTGTTACTGGCGTTGGCCTTGTCTCTGAGGTTTTCAATCAAACAAAACTTGATCAATTACCTGGGGATTCTGCGATTGGTCATGTTCGTTACTCCACTGCTGGATCTTCTATGCTTAAGAATGTTCAACCCTTTGTTGCTGGTTACAGATTTGGGTCTGTTGGGGTTGCTCATAATGGTAATTTAGTTAATTATCGCTCTCTTAGAGCTAAGCTTGAAGATACTGGTTCTATTTTCAATACTAGTTCCGATACTGAGGTTGTTCTTCACCTTATTGCAATTTCAAAACATAGACCTTTCTTGTTGAGGATTGTTGATGCTTGTGAACAGCTTGAAGGAGCTTATTCTATGGTTTTTATTACTGAAGATAAATTAGTTGCTGTTCGTGACCCTTTTGGTTTTAGGCCTTTGGTTATGGGTAGGAGAAGTAATGGGGCTGTTGTATTTGCTTCTGAAACTTGTGCTCTTGATTTAATTGAAGCTACATATGAAAGAGAAGTCTTTCCTGGGGAAGTTTTAGTAGTTGATAAGAATGGTATTCAATCCCTCTGTTTAATGGCTCATCCTCAGCCTAAATCCTGCATTTTTGAACACATATACTTTGCTCTTCCCAACTCTGTTGTCTTCGGCCGTTCTGTCTACGAATCCCGCCGAATATTCGGGGAGATACTTGCCACTGAAGCCCCTGTTGATTGTGATGTTGTAATAGCTGTCCCGGATTCAGGAGTAGTAGCTGCTCTTGGGTATGCAGCCAAAGCTGGGGTTGCTTTCCAACAAGGTCTCATAAGGTCTCATTATGTGGGGAGGACATTCATCGAACCATCGCAGAAGATTCGTGACTTCGGTGTAAAGCTGAAGCTGTCGCCTGTTCGAGCAGTGTTGGAAGGGAAGAGAGTTGTTGTTGTGGATGACTCAATTGTTAGAGGCACAACATCTTCAAAGATTGTGAGATTGTTGAAGGAAGCAGGAGCAAAAGAAGTTCATATGAGGATAGCTAGTCCTCCAATTATAGCCTCATGTTATTATGGAGTGGACACACCAAGTTCTGAAGAACTGATTTCCAACAGGATGAGTGTGGAGGAAATAAGAGAGTTTATAGGCTCTGATTCACTTGCTTTTCTGCCATTTGGTAGCTTGGAAAAGCTTTTGGGAAATGATTCTACAAAGTTTTGCTATGCTTGCTTTTCAGGTAACTACCCTGTTGAGCCAAGAGAATTAAAAGTGAAAAGGGTGGGAGATTTTGTTGATGATGGGTTGAATGGAAGCTTGGAATCCATTGATGGAGGTTGGGTTCAAGCCAATATAAACCAGAATCTTGACAATAATCTCACAGTGGAGAAAGTTGGAGGTCTTTGA 1734 43.71 MAVATTLNLPSLSSSSSLSHPTPTLQTHISVSSKTLQKSHFPSSFSLPNPHKPLFLSSASKSPISDFFSGHDENDSSDEKLREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVAVNENVLQSVTGVGLVSEVFNQTKLDQLPGDSAIGHVRYSTAGSSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRSLRAKLEDTGSIFNTSSDTEVVLHLIAISKHRPFLLRIVDACEQLEGAYSMVFITEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVFPGEVLVVDKNGIQSLCLMAHPQPKSCIFEHIYFALPNSVVFGRSVYESRRIFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGSDSLAFLPFGSLEKLLGNDSTKFCYACFSGNYPVEPRELKVKRVGDFVDDGLNGSLESIDGGWVQANINQNLDNNLTVEKVGGL* 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12806892 12809868 - CsaV3_2G015340.1 Csa02g01318 519375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01318 577 Pfam Glutamine amidotransferase domain 165 282 IPR017932 -
Csa02g01318 577 CDD GPATase_N 85 335 IPR035584 -
Csa02g01318 577 Gene3D - 344 508 IPR029057 -
Csa02g01318 577 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 40 557 - -
Csa02g01318 577 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 85 304 IPR017932 -
Csa02g01318 577 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 85 308 IPR029055 -
Csa02g01318 577 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 85 526 IPR029055 -
Csa02g01318 577 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 40 557 - -
Csa02g01318 577 TIGRFAM purF: amidophosphoribosyltransferase 85 526 IPR005854 GO:0004044|GO:0009113
Csa02g01318 577 CDD PRTases_typeI 347 458 IPR000836 -
Csa02g01318 577 MobiDBLite consensus disorder prediction 1 26 - -
Csa02g01318 577 Hamap Amidophosphoribosyltransferase [purF]. 84 525 IPR005854 GO:0004044|GO:0009113
Csa02g01318 577 Pfam Phosphoribosyl transferase domain 342 454 IPR000836 -
Csa02g01318 577 SUPERFAMILY PRTase-like 320 531 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01318 K00764 purF, PPAT; amidophosphoribosyltransferase [EC:2.4.2.14] - csv:101203840 1110.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00840 Csa-Chr2:7683352 Csa02g01318 Csa-Chr2:12806892 2.39E-06 dispersed
Csa02g01318 Csa-Chr2:12806892 Csa06g03158 Csa-Chr6:26916682 9.62E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g59 Blo02g00658 . . Bda08g00971 . . Bma05g00406 . . . Cma02g00358 Cma20g00802 Car02g00225 Car20g00687 . . . . . . . . . . . . . . . . . Cone12ag1199 Cone8ag1246 Cone3ag1203 . Lsi10g00425 . Chy11g00327 . . . . . . . . . Sed01g0252 Cmo02g00360 Cmo20g00810 . . . . Cpe16g00281 Cpe05g01298 Bhi10g01929 Tan05g1228 Cmetu11g1361 . Hepe08g0964 . . . . . . . . . . Csa02g01318 . Cme11g00452
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02398 . 33 189 PRT Gene Family AT1G80050 78.3 4.0e-66 247.7
Csa03g00299 . 77 227 PRT Gene Family AT1G80050 75.5 9.3e-63 236.5
Csa05g00402 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Csa02g01900 . 107 256 PRT Gene Family AT1G80050 70.7 8.4e-56 213.4
Csa02g02398 . 1 148 PRT Gene Family AT5G11160 79.7 7.4e-63 236.9
Csa05g00402 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Csa02g01900 . 83 222 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Csa03g00299 . 55 192 PRT Gene Family AT5G11160 72.5 1.4e-53 206.1
Csa02g01900 . 78 258 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Csa03g00299 . 51 227 PRT Gene Family AT1G27450 75.1 1.3e-73 272.7
Csa05g00402 . 7 180 PRT Gene Family AT1G27450 73.6 1.6e-71 265.8
Csa02g02398 . 11 183 PRT Gene Family AT1G27450 68.8 3.5e-66 248.1
Csa02g01318 . 74 558 PRT Gene Family AT2G16570 85.0 1.0e-241 832.8
Csa02g01318 . 73 558 PRT Gene Family AT4G34740 85.4 1.6e-242 835.5
Csa02g01318 . 30 531 PRT Gene Family AT4G38880 70.7 3.5e-199 691.4
Csa02g01900 . 78 258 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Csa03g00299 . 51 227 PRT Gene Family AT1G27450 75.1 1.3e-73 272.7
Csa05g00402 . 7 180 PRT Gene Family AT1G27450 73.6 1.6e-71 265.8
Csa02g02398 . 11 183 PRT Gene Family AT1G27450 68.8 3.5e-66 248.1
Csa02g02398 . 33 189 PRT Gene Family AT1G80050 78.3 4.0e-66 247.7
Csa03g00299 . 77 227 PRT Gene Family AT1G80050 75.5 9.3e-63 236.5
Csa05g00402 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Csa02g01900 . 107 256 PRT Gene Family AT1G80050 70.7 8.4e-56 213.4
Csa03g00299 . 51 144 PRT Gene Family AT4G22570 87.2 3.7e-44 174.1
Csa05g00402 . 6 104 PRT Gene Family AT4G22570 80.8 1.4e-43 172.2
Csa02g01900 . 82 174 PRT Gene Family AT4G22570 80.6 1.6e-39 158.7
Csa02g02398 . 11 100 PRT Gene Family AT4G22570 77.8 4.4e-37 150.6
Csa03g00299 . 52 143 PRT Gene Family AT4G12440 87.0 4.6e-41 163.7
Csa05g00402 . 1 96 PRT Gene Family AT4G12440 82.3 2.3e-40 161.4
Csa02g01900 . 78 173 PRT Gene Family AT4G12440 79.2 4.8e-38 153.7
Csa02g02398 . 1 148 PRT Gene Family AT5G11160 79.7 7.4e-63 236.9
Csa05g00402 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Csa02g01900 . 83 222 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Csa03g00299 . 55 192 PRT Gene Family AT5G11160 72.5 1.4e-53 206.1
Csa06g00490 . 1 186 PRT Gene Family AT1G71750 64.5 1.1e-68 256.5
Csa07g01059 . 16 468 PRT Gene Family AT1G55810 85.4 3.1e-225 777.7
Csa03g02052 . 19 482 PRT Gene Family AT1G55810 73.1 4.3e-198 687.6
Csa07g01059 . 65 467 PRT Gene Family AT3G27440 77.2 1.5e-184 642.5
Csa03g02052 . 80 482 PRT Gene Family AT3G27440 75.2 1.2e-178 622.9
Csa03g02052 . 1 483 PRT Gene Family AT3G27190 86.0 7.7e-246 846.3
Csa07g01059 . 3 467 PRT Gene Family AT3G27190 74.2 8.3e-208 719.9
Csa04g01535 . 3 289 PRT Gene Family AT3G53900 66.6 3.0e-107 385.2
Csa07g01059 . 1 468 PRT Gene Family AT4G26510 84.5 3.6e-232 800.8
Csa03g02052 . 11 482 PRT Gene Family AT4G26510 75.4 4.3e-209 724.2
Csa03g02052 . 1 482 PRT Gene Family AT5G40870 85.9 5.0e-245 843.6
Csa07g01059 . 3 470 PRT Gene Family AT5G40870 73.4 2.4e-207 718.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01318 Csa_Chr02 FPKM 0.0 0.0 1.628252 0.902207 74.043098 85.753128 65.286217 0.0 0.267772 0.0