Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01323 ATGTGGGTTGAAGGACTTGAATTGCTACGGAAGATGCAGGGTCTGGATTTGAAGTATGACCAGTTCACTCTGTCTGCTTCTTTACGAGCATGCACTGGTTTATCTGCAATTGCACTAGGTAAGCAAGTGCATGCTTATATACTGCGAACGGTTTATGATATTACAAGTGATGTTCATTTGCAAAGCACATTAGTTGAAATGTATGGGAAGAATGGGATGGTGGAAAAAGCATGGAATGTATTCAAGTTTGCAGGACTTGGACGCCAAGAAGATGGGAAAAGGGATATTATAATGTGGACTTCTATGCTTAGTGTATATGGTAGAAATGGGTGTTACAAAAGAGTAATTGAACTGTACAACCAGATGTTGATGGAAGGGATCAAACCAGATAGGGTGGCTTTTGTGACAGTCATATCAGCTTGTGGTCATACTGGCGAGGTGAATCTTGGAGTCCAGTATTTTGACTCCATGCAGAGTGATTTTGGGTTGGAACCTGGTCAAGAGCACTACAGTTGTTTGGCTGACTTGCTCTGTAGAGCTGGGGAATTGGAAAAGGCATGGAAGCTCGTAAATGATATCAAAAGTCGGGATTACAATGTTTCCCTGTGGGGAGCTTTACTCCGTGCTTGCTTGGAACAGGGAAATATTAAGTTGGGCAATTTGGCAGCTCGTAGGGCACTTGAATTGGATCCTCAGAATACTGGGATATTAGTTATGCTATCGAATCTATATGCTGGTTTTGGCTTGTGGAACGAGATAGAGCATTTGAGGGAATCTGTGAGAAAGGAAGGGCTGTATAAAGATGTTGCATGTAGCTGGATAGAGATCACAAGCAACAAGGCAAATAATGAGACTGTTATAACAATTTTGGCTCGGTTAGAAGATGATGTGAAAACAACAAAAGATCATTGCCAACAAAGATTATATCCCAGGCGAGGTACAGATGGTCTCCTCGTCAAAGCTATACTTTATAGATTCAAGTTGCTTCGTGCATTCTCAGCCTTAACAGAGGTCTTCCCTTCCAACATCCACAAGTTTCACTTCACAGATTAA 1053 41.79 MWVEGLELLRKMQGLDLKYDQFTLSASLRACTGLSAIALGKQVHAYILRTVYDITSDVHLQSTLVEMYGKNGMVEKAWNVFKFAGLGRQEDGKRDIIMWTSMLSVYGRNGCYKRVIELYNQMLMEGIKPDRVAFVTVISACGHTGEVNLGVQYFDSMQSDFGLEPGQEHYSCLADLLCRAGELEKAWKLVNDIKSRDYNVSLWGALLRACLEQGNIKLGNLAARRALELDPQNTGILVMLSNLYAGFGLWNEIEHLRESVRKEGLYKDVACSWIEITSNKANNETVITILARLEDDVKTTKDHCQQRLYPRRGTDGLLVKAILYRFKLLRAFSALTEVFPSNIHKFHFTD* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12887681 12889861 - CsaV3_2G015390.1 Csa02g01323 519380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01323 350 Pfam PPR repeat family 95 141 IPR002885 -
Csa02g01323 350 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Csa02g01323 350 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Csa02g01323 350 Gene3D Tetratricopeptide repeat domain 41 148 IPR011990 GO:0005515
Csa02g01323 350 Gene3D Tetratricopeptide repeat domain 150 308 IPR011990 GO:0005515
Csa02g01323 350 SUPERFAMILY TPR-like 167 245 IPR011990 GO:0005515
Csa02g01323 350 PANTHER OS02G0126500 PROTEIN 1 274 - -
Csa02g01323 350 Pfam E motif 215 275 IPR046848 -
Csa02g01323 350 Pfam PPR repeat 62 82 IPR002885 -
Csa02g01323 350 Pfam PPR repeat 169 197 IPR002885 -
Csa02g01323 350 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 274 - -
Csa02g01323 350 TIGRFAM PPR: pentatricopeptide repeat domain 97 130 IPR002885 -
Csa02g01323 350 TIGRFAM PPR: pentatricopeptide repeat domain 170 198 IPR002885 -
Csa02g01323 350 TIGRFAM PPR: pentatricopeptide repeat domain 133 165 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01323 - - - csv:101223207 688.337
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01323 Csa-Chr2:12887681 Csa01g03438 Csa-Chr1:31344382 1.73E-15 dispersed
Csa02g01323 Csa-Chr2:12887681 Csa02g02132 Csa-Chr2:19319552 6.37E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g68 . . . . . . . . . . . Cma20g00798 . Car20g00683 . . . . . . . . . . . . . . . . . . . . . Lsi10g00430 . Chy11g00322 . . . . . . . . . . . Cmo20g00806 . . . . Cpe16g00285 . Bhi10g01925 . . . . . . . . . . . . . . Csa02g01323 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009137 1 6 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 0 1 0 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01323 Csa_Chr02 FPKM 2.225806 2.232873 6.013533 5.584771 12.924119 11.657337 11.53182 19.076714 15.628504 14.823679