Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01336 ATGGGAATTCGTTTGCCTTCAGTCCTCCTCAGCGCCAAGCAAATTCTCAAGATGAAAACTGTTTCTACGAGATGTCAGTCTGATGTTCCCAAAGGCCACATTCCGGTGTATGTTGGAGAAAACCAGAGAAAGCGGTTTTTTGTTCCGATTTCTTACTTGAATCATCCTTCATTTGTGAATTTACTTAGTAGAGCTGAAGAAGAGTTTGGATTCAGCCATCCAACAGGAGGTTTGACCATTCCCTGCAAAGAAGAAGCCTTCATTGATGTCACTTCTAGATTGCATATTTCATGA 294 41.5 MGIRLPSVLLSAKQILKMKTVSTRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVNLLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS* 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12934603 12939336 + CsaV3_2G015520.1 Csa02g01336 519393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01336 97 Pfam Auxin responsive protein 12 93 IPR003676 GO:0009733
Csa02g01336 97 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR22-LIKE 1 95 - -
Csa02g01336 97 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 95 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01336 K14488 SAUR; SAUR family protein - csv:101203413 196.052
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01332 Csa-Chr2:12925325 Csa02g01336 Csa-Chr2:12934603 6.74E-56 dispersed
Csa02g01334 Csa-Chr2:12929152 Csa02g01336 Csa-Chr2:12934603 1.08E-56 dispersed
Csa02g01336 Csa-Chr2:12934603 Csa02g01345 Csa-Chr2:12960837 9.63E-53 dispersed
Csa02g01335 Csa-Chr2:12932355 Csa02g01336 Csa-Chr2:12934603 5.09E-45 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g80 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g00464 Cam02g0470 Cec02g0470 . Clacu02g0473 Cmu02g0467 Cre02g0801 . . . . Lsi10g00455 . Chy11g00309 Cme01g01296 . . . . . . Bma03g00588 Bma08g00770 . Cmo02g00338 Cmo20g00780 . . . . . . . . . . . . . . . . . . . . Lsi11g01165 Csa02g01336 Chy01g00714 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000045 7 14 1 1 5 16 0 0 13 4 12 13 24 19 19 31 17 1 0 16 18 3 0 3 14 20 13 24 12 19 339
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01336 Csa_Chr02 FPKM 74.845085 85.988434 79.325043 76.827293 79.730484 73.533577 75.880005 141.307571 156.994751 144.571167