Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01347 ATGGAGGTTTTCTTCCCTTCCAACCCTCAATCCCTCACCTTCAATCCATGTCTTCCTCTCAATTCTCCTTCCTCCTTCTCCTACTCTCGCCTCCGCTTCGTCCGCCGTCAATTCCTTGGCTCTTCTCACAATCTCCGCCCTCCCGATGCCCTGCGCTCTCGTCGAAGGTGCCGGAACCTTGGCCTCTTTGTTCAATCTCCCAGGTGCATTCTCCGAGCTACCTTCAGTTCCAATCCGGTTCTCATCGTTGTTGCTGTCGTTACTTTCTCTGCTGTCTCCTTCATTTACATGAATTTAAATAGAAGGAAGAAGAATGCGGTTGAGCGTTCCCGATCTCCAAAGCTTGCATTATCCCAACTAGGTAGAGGCATCAACTGGTCTGTTGATGGTCATATGATGGGCTTTAGGGATCACCATGGCGACTTTTTGGAGCAGAACATTGCCGTAAAGGATAGAACTGAGGAGAAGAGTTATTCTGGGGAAGAAGAGACTGTTCTACAGCTTCAAAAATCTGGCCTGTCACATGAGGCCAGCGTCACTGAGACATTGCCGCCTTCTGTTTCTGAGGTTACTACTTCTAAGGATAGTGATTCTCTGTTTTCAGATGAAAGTGAAGCAACAGATCCTTCTCTTCTTTCTGCTATATTTGAATCTGGTGTCTTGCAGCCTCTTATTTTCGCCAATGACATGACTGACTTACGACTGAATGGATCTCATGTCAAATCCCACTCTGAATTGCCTGTTGTGGTTGATACAACTGAGCTTCCACCTGTAACTGGTCCTTTATATAGTGTGTATGATCAAGTTACTCAACATTTAAAAGAAGATGGTGAGCTTCTAAAAGAGGAAAAATTCAATAGTTCCAACTTTCAAATTGAAGAACCGGCTAGAGAAGATATTTACATGTTCTATGAAGATACAAAGTCAAGTAATCAAACAGAAACTTCTTCTCGTACTTCTCATCTATACAACCAAAAATTTTCTTCATTGATGGTTAATGGTGTCTCCAGAGTGGCAGAATTAGTGTTAGAGGATTCTCTTCCAGTTGCAGGGTATGTTCAAAGAGAAGTACCTGATGTTAGATATAAGGAAGGTTCTTCAGGAAACAGAAAAAAATCTGGTGGCAACAATATTTCAAGACATGGGGAAAGAAAAGAACCCAGTCTGCATAAAGGAAAAGTTGTGAATGGGTTACCCCATCCAAACGGGAAGCATGTTCATTACAAAAATCTTGATGTAGATCAATATAAATCATATAATCAATGTCTGAAAGGTGGAAGGCTGCACGACTGCATCAGAATACTTCAAGATATGGAAAAAGAAGGGATATTGGATATGAATAAGATTTATCATGGGAAGTTTTTCAATATTTGCAAGAGTAAAAAGGCTGTTCAGGAAGCTTTTCAGTACACCGCACTTATTCAAAACCCCACATTGAGTACATTCAATATGCTCATGTCTGTATGTGCAAGTTCTCAAGATTCTGAAAGAGCTTTCCAAGTTGTGCGGCTTGTCCAGGAGGCTGGAATGAAAGCAGATTGCAAACTGTACACTACTTTAATCTCAACATGTGGCAAAAGTGGAAAAGTGGATGCAATGTTTGAAGTATTCCACCGAATGGTTAATGCTGGTGTGGAACCTAACGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGCTCAAGTCGCAAAGGCATTTGGCGTGTATGGGATAATGAGGTCAAAGAACGTGAAGCCAGACAGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAGTCAGGCGCAGTGGATCGTGCTTTTGACGTGCTTGCAGAAATGGGGGCTGAGTTACATCCTATAGAGCCGGATCATATTACAATTGGTGCTTTGATGAAGGCATGTGCAAATGCTGGTCAGGTTGATCGAGCAAGAGAAGTGTACAAGATGATCCATGATTATAAGATTAAGGGCACACCAGAGGTTTACACCATTGCTGTTAATTGTTGCAGTCAATCTTGTGATTGGGACTTTGCATCCAATATATATCAAGATATGACCAGGAAAGGAGTGCAACCTGATGAGATTTTTCTCAGTGCATTAATAGATGTTGCAGGCCATGCTGGTAAGCTGGATGCTGCCTTTGAAGTCTTAGGAGAAGCCAAGACACTAGGGATACGTGTTGGCATTGTGTCATATAGTTCTTTGATGGGTGCCTGTAGCAATGCTAAAAACTGGCAGAAGGCCTTGGCACTGTATGAGGATCTCAAGTCTATGAAATTGAGGCTAACTGTATCAACTGTAAACGCACTAATAACTGCACTGTCTGATGGGGAACAACTACAAATGGCTATGGATATTCTAACTGAAATGAAGGAATTAGGACTCTCCCCAAACAATATTACATACTCCATACTTACGGCAGCGAGTGACAGGAATAATGATTTAGAAATTGCCCTGATGCTTCTCTCTCAAGCCAAAGAGGATGGGATTGTGCCAACCTTAACCATGTATAGGTGCATAATTGGCATGTGCTTACGAAGAATTGCAGATCCATCCTCCCTTGATAGACCACTCATGTCACTGGACTCTACACTGCCTCAAGTCGATAGTAAGTGGACAGCACAGGCCTTAAAGGTGTACCGGGAAATAATTGAAGCCGGAATTGTTCCTAGCATTGACGTTTTATCTCAAGTTTTGGGGTGCTTGCAGATTCCTCATGATCCCGCTTTAAAAAGTAGACTCATAGAAAACATAGGAGTAAGTGCTGACTCATCAAGATCTTCAAGTCTCTGCTCCTTGATAGATGGCTTTGGTGAATATGACCCTCGTGCATTTTCACTGTTTGAGGAAGCTGCTTCACTTGGAGTAGCTCCATTTGTATCCTTAAAAGGAAATCCTATTGTTGTAGATGCCAAGGAGTTGCAGATTCATACAGCTGAGGTTTACCTCTTGACAGTTTTGAAAGGTCTCAAACATCGTCTTGCCGCTGGTTCAAGGTTACCGAACATAATGATCTTACTGTCGAATGAGACAACGGAAATTCTCTTTTCAAAGGGGGAGAGAACCATTAATCTTTCGGGAAGGGTTGGACAAGCAGTTGCGGCATTGTTGAGAAGACTTGGGCTTCCTTACCAGGGGAATGAATCAAGTGGAAAAATCAGAATCAATGGTTTGGCCTTGAGAAGATGGTTACAACCGAAACTTTCCGATTCTCTAAGTGGAAAACCAGGAGAGTTCGGCACGTTTCAGTCACGTCTAAGAAAAGGAATAAGCCACCAGCAGCGTGATATTCGCATTGGGAACCTATCTTTGGATTAA 3309 42.55 MEVFFPSNPQSLTFNPCLPLNSPSSFSYSRLRFVRRQFLGSSHNLRPPDALRSRRRCRNLGLFVQSPRCILRATFSSNPVLIVVAVVTFSAVSFIYMNLNRRKKNAVERSRSPKLALSQLGRGINWSVDGHMMGFRDHHGDFLEQNIAVKDRTEEKSYSGEEETVLQLQKSGLSHEASVTETLPPSVSEVTTSKDSDSLFSDESEATDPSLLSAIFESGVLQPLIFANDMTDLRLNGSHVKSHSELPVVVDTTELPPVTGPLYSVYDQVTQHLKEDGELLKEEKFNSSNFQIEEPAREDIYMFYEDTKSSNQTETSSRTSHLYNQKFSSLMVNGVSRVAELVLEDSLPVAGYVQREVPDVRYKEGSSGNRKKSGGNNISRHGERKEPSLHKGKVVNGLPHPNGKHVHYKNLDVDQYKSYNQCLKGGRLHDCIRILQDMEKEGILDMNKIYHGKFFNICKSKKAVQEAFQYTALIQNPTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKACANAGQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCSQSCDWDFASNIYQDMTRKGVQPDEIFLSALIDVAGHAGKLDAAFEVLGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYEDLKSMKLRLTVSTVNALITALSDGEQLQMAMDILTEMKELGLSPNNITYSILTAASDRNNDLEIALMLLSQAKEDGIVPTLTMYRCIIGMCLRRIADPSSLDRPLMSLDSTLPQVDSKWTAQALKVYREIIEAGIVPSIDVLSQVLGCLQIPHDPALKSRLIENIGVSADSSRSSSLCSLIDGFGEYDPRAFSLFEEAASLGVAPFVSLKGNPIVVDAKELQIHTAEVYLLTVLKGLKHRLAAGSRLPNIMILLSNETTEILFSKGERTINLSGRVGQAVAALLRRLGLPYQGNESSGKIRINGLALRRWLQPKLSDSLSGKPGEFGTFQSRLRKGISHQQRDIRIGNLSLD* 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12970585 12981803 - CsaV3_2G015630.1 Csa02g01347 519404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01347 1102 MobiDBLite consensus disorder prediction 176 204 - -
Csa02g01347 1102 MobiDBLite consensus disorder prediction 376 391 - -
Csa02g01347 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 795 829 IPR002885 -
Csa02g01347 1102 TIGRFAM PPR: pentatricopeptide repeat domain 623 653 IPR002885 -
Csa02g01347 1102 TIGRFAM PPR: pentatricopeptide repeat domain 550 583 IPR002885 -
Csa02g01347 1102 TIGRFAM PPR: pentatricopeptide repeat domain 481 514 IPR002885 -
Csa02g01347 1102 TIGRFAM PPR: pentatricopeptide repeat domain 658 691 IPR002885 -
Csa02g01347 1102 TIGRFAM PPR: pentatricopeptide repeat domain 763 795 IPR002885 -
Csa02g01347 1102 TIGRFAM PPR: pentatricopeptide repeat domain 727 759 IPR002885 -
Csa02g01347 1102 TIGRFAM PPR: pentatricopeptide repeat domain 516 549 IPR002885 -
Csa02g01347 1102 MobiDBLite consensus disorder prediction 176 195 - -
Csa02g01347 1102 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 73 1102 - -
Csa02g01347 1102 Gene3D Tetratricopeptide repeat domain 561 718 IPR011990 GO:0005515
Csa02g01347 1102 Gene3D Tetratricopeptide repeat domain 719 850 IPR011990 GO:0005515
Csa02g01347 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Csa02g01347 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 654 IPR002885 -
Csa02g01347 1102 Pfam Pentatricopeptide repeat domain 802 841 IPR002885 -
Csa02g01347 1102 Gene3D Tetratricopeptide repeat domain 444 560 IPR011990 GO:0005515
Csa02g01347 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 725 759 IPR002885 -
Csa02g01347 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Csa02g01347 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 613 IPR002885 -
Csa02g01347 1102 Pfam Pentacotripeptide-repeat region of PRORP 628 769 IPR033443 -
Csa02g01347 1102 Pfam Pentacotripeptide-repeat region of PRORP 480 615 IPR033443 -
Csa02g01347 1102 MobiDBLite consensus disorder prediction 361 402 - -
Csa02g01347 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 760 794 IPR002885 -
Csa02g01347 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Csa02g01347 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 655 689 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01347 - - - csv:101204147 2137.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01347 Csa-Chr2:12970585 Csa07g01919 Csa-Chr7:19023512 5.23E-32 dispersed
Csa04g02069 Csa-Chr4:21092256 Csa02g01347 Csa-Chr2:12970585 8.89E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01347 Csa_Chr02 FPKM 29.782677 34.371323 8.775477 9.338482 202.270538 220.514877 185.349274 2.836473 3.123294 2.50568