Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01354 ATGGATCAACTAATTCAACGCGACGGTCTCCTTCAGAATTCGCCCACACCCTCCTCCTCATCCTCCGTTGTCCCATGCGTTGAACTTCCCGGCCACCCAATTCGTTCTCAATCCAGTTCCAGGTCTGAAGGGGAGTTCAAGGATTCTGCAGCTGCTAGAAGAGTTCAGAAGGCTGACAGAGAGAAATTAAGAAGGGGTCGTTTGAATGAGCAATTTGTCGAGCTGGGAAACATTTTAGATCCTGATAGGCCCAAGAATGACAAAGCAACCATTTTAATGGATACCATTCAATTGCTGAAGGATCTGACATCTCAAGTGAACAAATTGAAAGCTGAATATGCTACTTTAACAGAAGAATCACAGGAGCTAGCCCAGGAAAAGAGTGATCTGAGAGAAGAGAAGGCGTTGCTTAAATCTGATATTGAGAATCTTAATACTCAGTATCAGCAGAAACTCAGGGCTACGTATCCTTGGGCTGCCATGGATCACTCAGTTGTCATGGCCCCTGCCCCCTTTCCATTTCCCATGCCGATGCAAATGCCTCCAGGGCCATATCCCCTGCATCCATCCTTGCAGCCTTTTACGTTCTTTGGTAATCCAGATCCCAGAGTGATTGCAAACCCTTGTTCAACCTTCGTCCCATACATACCTCCTAATTCCTTGACCGAGCAGCAGTCCTCCCAAAATGCACCACCTTTCATTCAGTCAGACAATCGGTCTCGTAACTTGAGTGAGCAAAATACCAGGAGCAAGTCCTCAATTGAAAGCAAGATTGAGAAAAGTGAAGATTCTAATGAAGTTGCAACTTGCCTGGAGTTGAAAACTCCGGGATCTTCCACAGATCAGGATACATCGTACGAACAAACAAACGGAAAAAACAGAAAGGAAAGCAATCTATCAGTAGAGAGTTCTTCAAGTAGATGTTCTTCACCTCGTAGTTTAGAGGCCAACTCATCTAGTAGCATGCCAAATGGACGAAAATCAACTGATATATGTGGAAGCCCATAA 1008 44.94 MDQLIQRDGLLQNSPTPSSSSSVVPCVELPGHPIRSQSSSRSEGEFKDSAAARRVQKADREKLRRGRLNEQFVELGNILDPDRPKNDKATILMDTIQLLKDLTSQVNKLKAEYATLTEESQELAQEKSDLREEKALLKSDIENLNTQYQQKLRATYPWAAMDHSVVMAPAPFPFPMPMQMPPGPYPLHPSLQPFTFFGNPDPRVIANPCSTFVPYIPPNSLTEQQSSQNAPPFIQSDNRSRNLSEQNTRSKSSIESKIEKSEDSNEVATCLELKTPGSSTDQDTSYEQTNGKNRKESNLSVESSSSRCSSPRSLEANSSSSMPNGRKSTDICGSP* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13017831 13023291 - CsaV3_2G015700.1 Csa02g01354 519411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01354 335 MobiDBLite consensus disorder prediction 271 335 - -
Csa02g01354 335 MobiDBLite consensus disorder prediction 46 61 - -
Csa02g01354 335 Gene3D - 50 155 IPR036638 GO:0046983
Csa02g01354 335 MobiDBLite consensus disorder prediction 1 25 - -
Csa02g01354 335 CDD bHLH_AtILR3_like 57 131 - -
Csa02g01354 335 PANTHER TRANSCRIPTION FACTOR BHLH121 35 328 IPR044579 GO:0003700|GO:0055072
Csa02g01354 335 Coils Coil 92 154 - -
Csa02g01354 335 MobiDBLite consensus disorder prediction 252 267 - -
Csa02g01354 335 PANTHER TRANSCRIPTION FACTOR BHLH121 35 328 - -
Csa02g01354 335 SMART finulus 58 108 IPR011598 GO:0046983
Csa02g01354 335 MobiDBLite consensus disorder prediction 217 335 - -
Csa02g01354 335 Pfam Helix-loop-helix DNA-binding domain 53 102 IPR011598 GO:0046983
Csa02g01354 335 MobiDBLite consensus disorder prediction 217 251 - -
Csa02g01354 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 102 IPR011598 GO:0046983
Csa02g01354 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 122 IPR036638 GO:0046983
Csa02g01354 335 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00226 Csa-Chr1:1450554 Csa02g01354 Csa-Chr2:13017831 3.94E-20 dispersed
Csa02g01354 Csa-Chr2:13017831 Csa03g02287 Csa-Chr3:20405212 6.31E-21 dispersed
Csa03g01221 Csa-Chr3:9421374 Csa02g01354 Csa-Chr2:13017831 1.14E-14 transposed
Csa02g01354 Csa-Chr2:13017831 Csa06g03326 Csa-Chr6:27815147 6.24E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30929 PF00010 HLH 6.20E-08 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01354 - - csv:101213608 598.586