Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01357 ATGAGGATTCCTCCTCTGCTTGGAAGGGCACCCTTGTTGTGCTTCTTCTTGGTGTCCTTTGTTTTTGCTGCAACATTGTGCAATGCCGATGTAAAGTCGGTCGAGGTCGTCGGTGTTGGTGAATGTGCTGATTGCAAAGAGAGTAACATAAAAACTAGCCATGCTTTGTCAGGACTGAAAGTAGCCATAGATTGCAAATCAAGTGATGGGAACTTCAAAACAAGAGGGATTGGAGAGTTGAATGAAGAAGGAAAGTTCACTGTATTGCTGCCTAATGCCATTGTGGAAGATGGAAAGTTGAAGGAAGAATGTTATGCACAACTTTATAGTGCAGCAGCCAACCCTTGCCCTACTCATGATGACCTTCAATCCTCTAAGATTGTTTTACTATCCAAATCAGATGAGAAACACACTTTTGGGTTACCTGGTAAAATCAAGATTTCACCAGGAACTTGTACATCAGCTTTCCTTTGGCCATTTTTCAAGTACCCTCCTCTTACCAAGTTCCCTCAATTTCCTTTGCCACTCCCTCTTATACCTGACTTTCATCATCCACATTTGAAGCATTTTGTTCCCCCATTCTCCTTCCCTCCATTGCCACCTAAAGTCTTCTCTCCATTTCCACCTAAAGAGTTCCCACCAACGCCGGTGTATGAAAAGCCACTTCCACCACCTGTTCCAGTTTATGAAAAACCTGTTCCACCACCTACACCGGTATATGAAAAGCCACTTCCACCACCTGTTCCTGTTTATGAAAAACCTCTTCCCCCACCTACACCGGTCTATGAAAAACCACTTCCACCGCCTACTCCAGTTTATGAAAAACCTCATCCTCCGCCTACACCTGTCTATGAAAAGCCACTTCCACCGCCTGTTCCTGTTTATGAAAAACCTCTTCCCCCACCTACACCGGTCTATGAAAAACCACTTCCACCGCCTACTCCAGTTTATGAAAAACCTCATCCTCCGCCTACACCTGTCTATGAAAAGCCACTTCCACCGCCTGTTCCTGTGTATGTAAAGCCTATTCCTCCACCTACTCCGATCTATGAAAAGCCACTTCCACCTCCTGTTCCGGTTTATAAAAAACCTGTTCCTCCACCTACACCAGTCTATGAAAAGCCACATCCACCGCCTGTTTATGAAAAGCCACTTCCACCTCCTGTGTATGTAAAACCTAAGCCTCCACCAGTGCCAATCTACAAAAAGCCACTTCCACCACCGGTTCCTGTTTACAAAAAACCTTGTCCTCCCCCTGTTCCTATTTACAAGAAACCTAATCCTCCACCAGTATATGAGAAGCCACTTCCACCACCAGTTCCTGTTTATAAGAAACCTAATCCTCCACCAGTGCCAGTCTACAAGAAGCCTCTTCCACCTCCTGTTCCCATATATAAGAAACCCCTCCCTCCACCTGTTCCCATTTACAAGCATCCATTTTTCAAGCACAAACACCCATTCTTCAAGCATAAACACCCATTCTTCAAGCATTTGCCTCACATTCCAAAAATTCCCCATCATCCATTTTTTAAGAAGCCATGGCCACCTATCCCTCAATTCCCTCCTGTTCCCAAGTCCCCACCAAAGTACTTCTCCCACCACATGTTTGGAGGGTTCCCTAAACATCCACCGGTTGTTTCTCATCCTTAG 1650 45.27 MRIPPLLGRAPLLCFFLVSFVFAATLCNADVKSVEVVGVGECADCKESNIKTSHALSGLKVAIDCKSSDGNFKTRGIGELNEEGKFTVLLPNAIVEDGKLKEECYAQLYSAAANPCPTHDDLQSSKIVLLSKSDEKHTFGLPGKIKISPGTCTSAFLWPFFKYPPLTKFPQFPLPLPLIPDFHHPHLKHFVPPFSFPPLPPKVFSPFPPKEFPPTPVYEKPLPPPVPVYEKPVPPPTPVYEKPLPPPVPVYEKPLPPPTPVYEKPLPPPTPVYEKPHPPPTPVYEKPLPPPVPVYEKPLPPPTPVYEKPLPPPTPVYEKPHPPPTPVYEKPLPPPVPVYVKPIPPPTPIYEKPLPPPVPVYKKPVPPPTPVYEKPHPPPVYEKPLPPPVYVKPKPPPVPIYKKPLPPPVPVYKKPCPPPVPIYKKPNPPPVYEKPLPPPVPVYKKPNPPPVPVYKKPLPPPVPIYKKPLPPPVPIYKHPFFKHKHPFFKHKHPFFKHLPHIPKIPHHPFFKKPWPPIPQFPPVPKSPPKYFSHHMFGGFPKHPPVVSHP* 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13044509 13047459 + CsaV3_2G015730.1 Csa02g01357 519414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01357 549 Pfam Pollen protein Ole e 1 like 36 123 - -
Csa02g01357 549 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 1 264 - -
Csa02g01357 549 PANTHER PROLINE-RICH PROTEIN 2 1 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01357 - - - csv:101204386 360.147
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa02g01357 Csa07g00082 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01357 Csa-Chr2:13044509 Csa05g03052 Csa-Chr5:30647624 5.75E-09 dispersed
Csa02g01069 Csa-Chr2:10392727 Csa02g01357 Csa-Chr2:13044509 9.42E-07 transposed
Csa04g01005 Csa-Chr4:7791859 Csa02g01357 Csa-Chr2:13044509 2.46E-14 transposed
Csa02g01357 Csa-Chr2:13044509 Csa07g00082 Csa-Chr7:779944 5.18E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g117 . . . . . Bpe12g00110 Bma05g00415 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00465 Csa07g00082 . . . Blo13g00524 . . . . . . . . . . . . . Cpe16g00299 Cpe05g01313 . . . . . . . Cla02g01128 Cam02g1203 Cec02g1206 Cco02g1256 Clacu02g1192 Cmu02g1154 Cre02g1464 . Csa02g01357 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001811 3 2 2 5 2 3 1 3 3 1 3 3 2 2 2 2 3 3 2 2 1 2 1 2 2 1 2 2 2 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01357 Csa_Chr02 FPKM 2.413853 2.066827 1.42663 1.4764 7.686298 7.023591 7.191984 70.985146 76.456299 69.310028