Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01366 ATGGCTGCCCAAAGCTTTCCCATTTACATATCCATGCTTCTGGGTTTGTTGGCAATTTTATCATCATATGGGAGTTGTAGCTTTGACACCAACTTTTCCATTGAAGAAGCAACTTTGAAAGACCTCCAACTTGCTTTCTACCAAAACAAACTCACCTCAACGCAACTTGTTGAGTTTTACCTCGAACAAGTGCGTAGATTTAACCCCATCCTGAATGGGATCATAGAAGTGAATCCAGATGCTTTAAACCAAGCCTCTCAAGCCGACCTTGAGCGCAAGAGAAGCTCACCGAGATCTTTGTCTCCACTTCATGGCATTCCTGTACTTGTAAAAGATAACATTGCAACCAAGGATCAGCTCAACACAACGGCTGGCTCTTTTGCTCTGCTTGGCTCTATTGTTCCTCGTGATGCAGGTGTGGTGACTAAGTTAAGGAAGGCAGGTGCAATTATCTTTGGGAAAGCGAGCCTGAGTGAGTGGTCCGATTTCAGGTCCTATGAACAGCCCAATGGTTGGAGCGCTAGGGGTGGCCAAGGGAAGAATCCTTACACAATGGGAGAACCGTGTGGCTCAAGTAGCGGCTCTGCCATATCCGTTGCAGCAAATATGGTTACAGTTTCCCTGGGAACCGAAACTGATGGATCAATATTGTGCCCTTCTACTCTCAACTCAGTAGTTGGCATCAAACCCACAGTAGGTCTCACAAGTCGAGCAGGGGTCGTTCCGATCTCTTTGAGGCAGGACACTGTAGGGCCTATTTGTAGAACAGTAGCAGATGCAGCTTATGTTCTAGATGCCATTGCGGGACCAGACAGATATGATAATTCAACAATTGAAGCATCAAAATATGTTCCAAAAGGTGGATATGGTCAATTTCTAAAGGAAGATGGGCTGAAAGGAAAGAGAATAGGAATCGTGAGAAAATTGTATGATTTTGGCCATGATGATGTGTTCTACATTGGAGCTTTTGAGAAAGTTTTCAAAACCCTGAAGCAAGGAGGAGCAATATTGGTAGACAATTTGACGATCAACAGCTTTCATGTAATCACTGGCAGTTCAAGTGGAGAGTGGACTGCAGTGCTTGCTGAGTTCAAAATATCTATAAATGTATACCTCAAACAGCTAGTTGCATCTCCAATTCGATCCCTGTCAGATGCAATAGAATTCAACAGAAAGAACTCAAAACTTGAAAAGCTAAAGGAGTATGGTCAGGAGTTATTTCTAGAAGCAGAGGCAACAAAAGGAATCGGAGGTGCAGAAAAGGCAGCATTAGCCAGATTAGCAAAACTGTCGAAAGAGGGATTTGAGAGATTGATGATTAAGAATAAGCTTGATGCAATAGCAGCTCCTGGTCGGTTAATCTCTCATTTTCTTGCAATTGGAGGTTTTCCTGGAGTTAGTGTACCAGCTGGATATAACCCTCAAGGGCTTCCCTTTGGCATTGGCTTTGGAGGATTAAAAGGGTTCGAGCCAAGGAAAATGACAAGGAACATGGAGATTACCAAGCTAGCGATGGGGGTTCTCGTCCTCTTCCTCTCCGCCATATCTGCGCGTTCCGAGTACTACTCCAAAACTGTCCCAAGGGTTCAGTTAAAGGAGAAGGTAACCAATCTCCATTTCTTCCTTTTCGACATCCTGAGCGGGAAAAAACCCAGCGCCGTCGAAGTAGCGCATGCAAACATAACCATAGGCGAGCAGTCAGCGACTCCATTCGGCAGCGTCTACGCCGTCGACGACCCGCTCCGGGAAGGACCCGACCCGGAATCAAAAGTAATCGGAAACGCGCGTGGGCTGTACGTATCGGCAAGCCAAGGCGCAGACTTGTGCTTGGCGATGTATATTGATTACGGATTCACAACGGGGCCGTTCAACGGAAGCTCGATCAGCGTGTTTTCGAGGAATCCGGTGACGGAGCAGCGACGGGAGGTGGCGGTTGTGGGCGGGAGAGGGAAGTTTAAGATGGCTAGAGGGTTTGCAAAGCTGAAGACGCATTACTTGAATGTCAGTAATGGCGATGCGATTATAGAGTATAATGTTACTGTGTTTCATTACTAA 2055 46.08 MAAQSFPIYISMLLGLLAILSSYGSCSFDTNFSIEEATLKDLQLAFYQNKLTSTQLVEFYLEQVRRFNPILNGIIEVNPDALNQASQADLERKRSSPRSLSPLHGIPVLVKDNIATKDQLNTTAGSFALLGSIVPRDAGVVTKLRKAGAIIFGKASLSEWSDFRSYEQPNGWSARGGQGKNPYTMGEPCGSSSGSAISVAANMVTVSLGTETDGSILCPSTLNSVVGIKPTVGLTSRAGVVPISLRQDTVGPICRTVADAAYVLDAIAGPDRYDNSTIEASKYVPKGGYGQFLKEDGLKGKRIGIVRKLYDFGHDDVFYIGAFEKVFKTLKQGGAILVDNLTINSFHVITGSSSGEWTAVLAEFKISINVYLKQLVASPIRSLSDAIEFNRKNSKLEKLKEYGQELFLEAEATKGIGGAEKAALARLAKLSKEGFERLMIKNKLDAIAAPGRLISHFLAIGGFPGVSVPAGYNPQGLPFGIGFGGLKGFEPRKMTRNMEITKLAMGVLVLFLSAISARSEYYSKTVPRVQLKEKVTNLHFFLFDILSGKKPSAVEVAHANITIGEQSATPFGSVYAVDDPLREGPDPESKVIGNARGLYVSASQGADLCLAMYIDYGFTTGPFNGSSISVFSRNPVTEQRREVAVVGGRGKFKMARGFAKLKTHYLNVSNGDAIIEYNVTVFHY* 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13124263 13128085 + CsaV3_2G015820.1 Csa02g01366 519423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01366 684 Gene3D Amidase signature (AS) domain 24 498 IPR036928 -
Csa02g01366 684 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 18 493 - -
Csa02g01366 684 PANTHER AMIDASE 18 493 - -
Csa02g01366 684 SUPERFAMILY Amidase signature (AS) enzymes 33 490 IPR036928 -
Csa02g01366 684 Pfam Amidase 56 450 IPR023631 -
Csa02g01366 684 Gene3D - 522 670 IPR044859 -
Csa02g01366 684 Pfam Dirigent-like protein 536 682 IPR004265 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01366 K01426 E3.5.1.4, amiE; amidase [EC:3.5.1.4] - csv:101215057 931.784
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01364 Csa-Chr2:13118481 Csa02g01366 Csa-Chr2:13124263 0 dispersed
Csa02g01366 Csa-Chr2:13124263 Csa07g00086 Csa-Chr7:804272 0 dispersed
Csa03g00362 Csa-Chr3:3020568 Csa02g01366 Csa-Chr2:13124263 7.78E-30 dispersed
Csa07g00640 Csa-Chr7:4601608 Csa02g01366 Csa-Chr2:13124263 1.38E-20 dispersed
Csa02g01366 Csa-Chr2:13124263 Csa02g01367 Csa-Chr2:13132949 7.55E-37 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g127 . . . . . . . . . . . . . . Sed05g2229 . . Bhi05g01735 Tan02g0703 Cmetu01g2553 . . . . Cla02g00440 Cam02g0449 Cec02g0448 Cco02g0467 Clacu02g0451 Cmu02g0445 Cre02g0779 Cone12ag1220 . . . . . Chy11g00283 Cme01g01278 . Blo13g00522 Bda15g01043 . Bpe15g00824 . . Bma08g00763 . . . . . . . . . Bhi10g01879 Tan05g1171 . . Hepe08g0271 . . . . . . . . . . Csa02g01366 Chy01g00692 Cme11g00405
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000457 1 5 3 2 1 4 2 4 4 5 3 4 2 5 6 2 4 6 1 5 5 5 4 5 4 1 5 4 8 7 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01366 Csa_Chr02 FPKM 19.463585 19.941435 12.319193 12.954473 12.374608 12.592985 15.424016 10.870049 10.732597 12.127256