Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01369 ATGCCCACTTCCTCAGTCCTAGCATCCACAACCGGGGTTCGCTTCACCCGTTCCTCCTTTTACGAAGTTCTTGGGATTCCTATGACAGCTTCTTCCCGGGAAATCAAGGCGGCTTACCGGAAGCTAGCGAGAACCTGTCATCCCGACGTTGTGGCCGAGAATTCAGCGGAGGAGTTTATTAAAATTCAAACGGCGTATTCAACATTGTCGGATCCGGATAAAAGGGCGGATTACGACAGGGAGATTTGCAGAGCTCAATTGCTTTCGGTTTCGGGGTTGTCGTCTCGGACGCCTGTCTCGGGTTATTCCGATCTGATTCCATCTGAATATCGAAGAATTTGGAGAAAATTGGAAATGGGATTATGA 366 48.91 MPTSSVLASTTGVRFTRSSFYEVLGIPMTASSREIKAAYRKLARTCHPDVVAENSAEEFIKIQTAYSTLSDPDKRADYDREICRAQLLSVSGLSSRTPVSGYSDLIPSEYRRIWRKLEMGL* 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13149526 13150014 + CsaV3_2G015850.1 Csa02g01369 519426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01369 121 PANTHER DNAJ PROTEIN HOMOLOG-LIKE 14 90 - -
Csa02g01369 121 Pfam DnaJ domain 20 79 IPR001623 -
Csa02g01369 121 Gene3D DnaJ domain 6 91 IPR036869 -
Csa02g01369 121 PRINTS DnaJ domain signature 21 39 IPR001623 -
Csa02g01369 121 PRINTS DnaJ domain signature 54 74 IPR001623 -
Csa02g01369 121 ProSiteProfiles dnaJ domain profile. 19 82 IPR001623 -
Csa02g01369 121 CDD DnaJ 20 71 IPR001623 -
Csa02g01369 121 SUPERFAMILY Chaperone J-domain 16 83 IPR036869 -
Csa02g01369 121 SMART dnaj_3 18 74 IPR001623 -
Csa02g01369 121 ProSitePatterns Nt-dnaJ domain signature. 59 78 IPR018253 -
Csa02g01369 121 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 14 90 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01369 - - - csv:101205363 202.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01369 Csa-Chr2:13149526 Csa04g00197 Csa-Chr4:1150594 1.68E-15 dispersed
Csa03g01076 Csa-Chr3:8549097 Csa02g01369 Csa-Chr2:13149526 6.97E-16 transposed
Csa05g00609 Csa-Chr5:4007990 Csa02g01369 Csa-Chr2:13149526 4.22E-12 transposed
Csa02g01369 Csa-Chr2:13149526 Csa06g03329 Csa-Chr6:27834870 2.09E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g133 . . . . . Bpe12g00115 . . . . . . . Car20g00667 . . . . . . . . . . . . . . . . . Cone8ag0852 . . Cone9ag1605 . . Chy11g00279 . Blo04g00560 Blo13g00517 Bda15g01040 Bda14g00609 Bpe15g00820 . Bma03g00601 Bma08g00760 . . . . . . . Cpe16g00304 . . . . . . . . Cla02g01148 Cam02g1225 Cec02g1232 Cco02g1274 Clacu02g1205 Cmu02g1174 Cre02g1483 . Csa02g01369 . Cme11g00399
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001923 4 1 3 3 4 1 3 2 1 2 2 2 2 2 2 2 1 3 3 2 2 2 2 2 2 2 2 4 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01369 Csa_Chr02 FPKM 18.659164 18.349188 16.818604 16.23654 7.221021 8.765763 7.870508 15.73322 16.350061 14.758266