Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01372 ATGGATCGTCCACTTCCACTCCTTCTCGCCACTGTTTTCACTCTTCTCCTTCTCTCAGATGTTGAATCGACGTCTTTTAAGTTAATCAACAAGTGTCGTACCACGGTTTGGCCGGGTTTGTTATCCGGCGCCGGCACTGCCCAACTGCCCACCACCGGTTTCCCTCTCCACAGCGGCAAATCCAAGATCATTCCGCTTCCTAAATCTTGGTCCGGTCGATTATGGGCTCGAACCCTCTGTGGATTTGATTCAGATGGGAAATTCTCTTGCTTAACCGGCGACTGTGGGTCGGGTAAAGTGGAGTGTATCGGCGGCGGCGCTAAGCCACCAGCTACTTTGGCGGAGTTCACTTTGAACGGAGCCGATGGGCTTGATTTTTACGACGTGAGTTTGGTTGATGGGTATAACATTCCGATGCTGATAGTGGCTAAAGGTGGGAGGAGAGGAGGTTGCGCGGCGACGGGGTGTTTGGTGGATTTGAACGGGGCGTGTCCGTCAGAGCTGAGAGTAGCACATAGTGGTGGTGGTGGAAGGAGCGTGGCATGTAGAAGCGCGTGTGAGGCTTTTAATGCTCCGCAATTTTGTTGTAGTGAGGCGTTCTCTACGCCTGACACGTGTCGTCCATCGGTATATTCGGAATACTTTAAACATGCTTGCCCACGCGCGTATAGCTACGCGTATGATGACAAAACTAGCACTTTCACCTGTGCGTCTGCTGATTATCTCATTATATTTTGCCCATTGCCTTACACCAGTCAGAAAGTGTTGAGTGCAAAGAAAGACGGGGCAGAGCTACCACTCGTGAACAAGACGATGATGTATCTGAGAAGCCGAAGAGCAAACGGCGTGTTATCTGCAGGCAGATAG 867 51.1 MDRPLPLLLATVFTLLLLSDVESTSFKLINKCRTTVWPGLLSGAGTAQLPTTGFPLHSGKSKIIPLPKSWSGRLWARTLCGFDSDGKFSCLTGDCGSGKVECIGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNIPMLIVAKGGRRGGCAATGCLVDLNGACPSELRVAHSGGGGRSVACRSACEAFNAPQFCCSEAFSTPDTCRPSVYSEYFKHACPRAYSYAYDDKTSTFTCASADYLIIFCPLPYTSQKVLSAKKDGAELPLVNKTMMYLRSRRANGVLSAGR* 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13179658 13183635 + CsaV3_2G015880.1 Csa02g01372 519429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01372 288 ProSiteProfiles Thaumatin family profile. 23 247 IPR001938 -
Csa02g01372 288 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Csa02g01372 288 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Csa02g01372 288 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Csa02g01372 288 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Csa02g01372 288 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Csa02g01372 288 PANTHER OS03G0233200 PROTEIN 9 258 IPR001938 -
Csa02g01372 288 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 9 258 - -
Csa02g01372 288 CDD TLP-PA 25 246 - -
Csa02g01372 288 SUPERFAMILY Osmotin, thaumatin-like protein 25 247 IPR037176 -
Csa02g01372 288 PIRSF PR5 2 281 IPR001938 -
Csa02g01372 288 Gene3D Thaumatin 24 247 IPR037176 -
Csa02g01372 288 SMART tha2 26 247 IPR001938 -
Csa02g01372 288 Pfam Thaumatin family 30 247 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01372 - - - csv:101216503 579.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01372 Csa-Chr2:13179658 Csa03g04288 Csa-Chr3:37543700 1.09E-121 dispersed
Csa05g02410 Csa-Chr5:26166270 Csa02g01372 Csa-Chr2:13179658 3.21E-90 dispersed
Csa02g01372 Csa-Chr2:13179658 Csa02g01374 Csa-Chr2:13192131 4.01E-90 proximal
Csa02g01372 Csa-Chr2:13179658 Csa06g03333 Csa-Chr6:27851431 6.70E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g138 Blo02g00698 . Bda06g00483 . . . . . . . . Cma20g00764 . Car20g00665 . . . . . . . . . . . . . . . . . . . . Cone10ag1178 Lsi10g00478 . Chy11g00276 . . . . . . . . . Sed05g3598 . Cmo20g00761 . . . . Cpe16g00306 . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . Cla02g01152 Cam02g1228 Cec02g1236 Cco02g1277 Clacu02g1209 Cmu02g1178 Cre02g1487 . Csa02g01372 . Cme11g00396
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000237 1 5 5 5 5 4 5 5 5 8 4 5 7 6 6 6 5 6 5 5 5 6 4 5 5 5 5 11 8 3 160
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01372 Csa_Chr02 FPKM 0.25436 0.195231 0.705888 0.463649 1.062051 0.973478 1.086074 4.02951 3.86804 4.077486