Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01393 ATGACGGTTGATCAGGAGGATTCTGAAGCTATTGAAGAGGAAAAGAAGAAGAAGACAAGGAAAAATGTTTTAGTGGGGATTAGGATGAATGGGGATAGCAGAGACCTGCTCAATTGGTCGATTGTTAAAGTTGCTGATCCTGGGGATTGTGTCATTGTAATCTATGTTTGTCAAAGTTCTGACCGTGCATCAAAAGATAAGCCCTTATTTGATGAATTCTTAGAAGGATACAGAAGCCTTTGTGATGTAAACAAGGTAACTTTCATTGCTCACATGGTGACTGGAAGTTCGGTTAAGAAGACTCTAGTCAGGCAGGCAAAAATCTATGCTGCTGGGGCCGTGGTTTTGGGAACAAGCAAACCATGTAATCTTGGGGGTTGGTCTTCAATAACCAGATATTTTGTTAAGCGTCTGCCTCCAACCACTAATATTTTGGTTCTCAACAATGGCAAAATTGTCTTCAGAAGATCCACCAATGATCAACTAACAGGCTTGAGTCTAGACCCAAAACCAAGTTTTAGTCAGGCTAGTCAATCCGACTTTGATGGCTCTGAGACTGAGAAATCTGTTTCTTATGGGGTTGGTAGTGAAGACTTGAAGGATGAAGTTGATGGAGTTGTCCTAGAAAGTAAAAGAAATTGTTCCAAACCAGATTCTGCAATGATGATGGAGCATTCCGAGCCGGGGCTTGGTTGGCCATTGCTCCGAACGACTCCAAGGATTTCGCAAACCTCATCTGTACATAACATGTCTGTAGTGCAATGGGTGATGAACTTACCTGATCGTTCCCCACATCGAAGTTTAAGCATAACAGTAAATGATCCATCGAAAAGTGAGATCCATCGAAAAGTGAGAGCTAAAGGAAATTTATCTTCCTTTTCTGAACTACCAGAAGACTTGGAGGATCTCCTGAAAACTAACTCAACTACTTATAAATGGTTTAGTCCTTACGTGTTGAAAACTTCAACTTCTCATTTCTCTTCAGAAAACCTGATTGGGAAAGGTGGTTGCAATCTTGTTTACAAAGGAATACTCCCAAATGGGAAGCCAGTAGCCGTTAAAGTAATGAACTCGTCCAAACAGGCATGGGACGAATTTTTTCGGGAAGTTGACATTATGTCCTCATTACATCACAAAAACATAAGTCCCTTTCTCGGTATCTGCATCGCAGACAATAAATTGATCTCTGTTTATGATTTCTTTTCCAAAGGAAGTTTAGAGGCAAATCTATATGGTAGGAATAAAGAAAAGAACATACTTTCATGGGAGGTAAGATTCAGGTTGGCTATTGGAATTGCAGAAGCGCTGAACTACTTACATGACGAATGTCCCCGACCTGTTGTGCACCGAGATGTTAAGACTTCAAACATTCTGCTCTCTGATGAACTCGAACCCAAGTTATCGGATTTTGGGCTTGCTATATGGGGACCAACAGAATCATCCTTTCAGATTGAAGCTGACGTGGTCGGAACATTTGGATATCTTGCTCCGGAATATTTCATGTATGGAAAAATGAGCAATAAGATTGATGTGTATGCCTTTGGTATAGTTCTACTTGAACTGTTATCGGGAAGGAAAGCAATCAGCGCTGAGACTTCTAAAGAGCAACAGAGCTTGGTTATGTGGGCCAAGCCAATCACAGAGAGTGGCAATGTGAAGGACATAGTTGATCCAAATTTGGAGGGAAAATTTGACGAGGAACAGTTGCAGAGAATGATTCTTGCAGCAACCCTTTGCATCACAAGAGCATCTCGAATCCGTCCTAGAATTAGTCAGATATTGAAGATTCTAAGAGGAGAAAGCGATACCGAAACCCTCCCTGTGGAGGATTCACAAAGTGTAGAGAATGGAGATGATGAAGTTTATCCAAATTCAAGTTCTGAACTGCATTTAAACCTTGCATTGCTTGGTGTTGATGATGATGGTGGAGACTCATTTAACAGTATGGAACAAAAAAAAAAGCTTACATTGGAAAAATATTTCAAAGAAAGATGGAGCAGATCCTCAAGCTTCAACTAG 2019 40.76 MTVDQEDSEAIEEEKKKKTRKNVLVGIRMNGDSRDLLNWSIVKVADPGDCVIVIYVCQSSDRASKDKPLFDEFLEGYRSLCDVNKVTFIAHMVTGSSVKKTLVRQAKIYAAGAVVLGTSKPCNLGGWSSITRYFVKRLPPTTNILVLNNGKIVFRRSTNDQLTGLSLDPKPSFSQASQSDFDGSETEKSVSYGVGSEDLKDEVDGVVLESKRNCSKPDSAMMMEHSEPGLGWPLLRTTPRISQTSSVHNMSVVQWVMNLPDRSPHRSLSITVNDPSKSEIHRKVRAKGNLSSFSELPEDLEDLLKTNSTTYKWFSPYVLKTSTSHFSSENLIGKGGCNLVYKGILPNGKPVAVKVMNSSKQAWDEFFREVDIMSSLHHKNISPFLGICIADNKLISVYDFFSKGSLEANLYGRNKEKNILSWEVRFRLAIGIAEALNYLHDECPRPVVHRDVKTSNILLSDELEPKLSDFGLAIWGPTESSFQIEADVVGTFGYLAPEYFMYGKMSNKIDVYAFGIVLLELLSGRKAISAETSKEQQSLVMWAKPITESGNVKDIVDPNLEGKFDEEQLQRMILAATLCITRASRIRPRISQILKILRGESDTETLPVEDSQSVENGDDEVYPNSSSELHLNLALLGVDDDGGDSFNSMEQKKKLTLEKYFKERWSRSSSFN* 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13335528 13338461 + CsaV3_2G016090.1 Csa02g01393 519450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01393 672 ProSiteProfiles Protein kinase domain profile. 326 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01393 672 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 19 646 - -
Csa02g01393 672 CDD USP_Like 22 139 - -
Csa02g01393 672 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 137 - -
Csa02g01393 672 MobiDBLite consensus disorder prediction 165 191 - -
Csa02g01393 672 MobiDBLite consensus disorder prediction 165 194 - -
Csa02g01393 672 Pfam Protein kinase domain 327 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01393 672 Gene3D HUPs 3 141 IPR014729 -
Csa02g01393 672 PANTHER OS08G0249100 PROTEIN 19 646 - -
Csa02g01393 672 Gene3D Phosphorylase Kinase; domain 1 295 400 - -
Csa02g01393 672 SUPERFAMILY Protein kinase-like (PK-like) 307 597 IPR011009 -
Csa02g01393 672 Gene3D Transferase(Phosphotransferase) domain 1 401 619 - -
Csa02g01393 672 SMART serkin_6 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01393 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01393 - - - csv:101206547 1328.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01393 Csa-Chr2:13335528 Csa02g01640 Csa-Chr2:15522476 4.41E-152 dispersed
Csa07g00142 Csa-Chr7:1249627 Csa02g01393 Csa-Chr2:13335528 7.14E-67 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g160 . Blo15g00380 Bda06g00477 Bda08g00992 Bpe07g00715 . Bma05g00367 Bma12g00919 . . Cma02g00258 Cma20g00752 . Car20g00653 . . . . . . . . . . . . . . . . . . . . . Lsi10g00758 . Chy11g00254 . . . . . . Bpe05g00289 . . . Cmo02g00255 Cmo20g00747 . . . . Cpe16g00317 Cpe05g01372 Bhi10g01849 . . . . . . Cla02g01167 . . . . . . . Csa02g01393 . Cme11g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005074 2 4 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 1 1 1 0 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77896 PF00069 Pkinase 1.30E-41 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01393 Csa_Chr02 FPKM 0.0 0.0 0.0 0.0 0.557267 0.350593 0.519487 0.0 0.0 0.0