Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01403 ATGATGGAGCAACAGGATTCTGTGGACAAGGAGTCTCTTATTGGTACTTGCAACAACAGAGATGGTGTTTCTTCAAGTGATATCCAGATTACAACTATAAATAATGATGAAGCTAGAATAAAAAATGAGAATACAAGCGATAAACCTAATATTCCGCATATATACAGGCAAGATATTGTAAAAAGCAAAGGTAGTGGTATGATAGGGATTGTGACTGAAGTTGCTGGTGATGCTGATTCAGATAGCGACATTACTGATGATGAAGATGAAGATGATGACGGTGAAGATGGTGGGAATGATGATGAGTGTGATGATAATGATGGTGATGGAGAGAAAGAAGGTCAGAACAAGGAAAATTGTGGTGATGACGGTAATGGCAGACATTCCAACGGAGATAATTATAAGAGCCAACCTCTTCCTGATAATGAAGTTCGTGTCCTTTGGATGGATGAAAGTGAGACAACTCAGCATGTCAATGATTTAACAGTCATTGATAGGGGGTTTGTACATGGTGATTTTGTTGCTGCTGTTTCTGATCCAACAGGGCAAGCAGGTGTTGTGGTAGATGTTAATATCTCTGTTGATTTGTTAGTTCCCGATGGATCAATCATGAAAGATATATCATCTAAAGACTTAAAACGTGTGAGAGATTTCACAGTGGGAGATTATGTGGTCCTTGGTCCATGGTTGGGTAGAGTTGATGATGTATTGGATAATGTGACTGTGATGTTTGATGATGGCTCTAAGTGTAAAGTCACAAAGGCAGAGCCATTGCGGCTCAAACCAGTTTCTAAAAATACCCTTGAAGATGCAAACTTTCCCTACTATCCTGGTCAGCGTGTAAGGGCAACTTCAACAGTTTTTAAGAATTCTAAATGGCTTTCTGGTTTATGGAAACCTAATCGCTTGGAAGGCACTGTCACGAAAGTTACAGTTGGTTCAGTGTTCATTTATTGGATAGCGTCTGCTGGATATGGACCAGATTCTTCTACTGCCCCAGCCGAAGAACAAACCCCAAAGAACTTAAGGTTATTAACTTGTTTCTCACATGCTAATTGGCAGTTGGGTGACTGGTGTCTTCTTCCTCCATCATTCTCCGCTGGCCTGACTAAGGACCCATCACAAACAGAACTTTCAGTGACCAACACATTAGATTGTGCACAATCGGTGGGTGCTTGTGATTCAGAGGATACTGTGCTAGATGAATTAAGTGGGACAACTGAATCCACTGATCTTGATTCCATTAGTGCATGCGATGGAAATTATAGGAATCCTGTGGATAATAGTTTGCCCGAATCTAGTAGTTCTAGAGCTCTCAAGGAGACTGCCCATGAGACTTGGCCTCTACATCGCAAAAAAATTCGCAAAGTTGTTGTCAGGAGAGATAAGAAGGCTAGAAAGAAAGAGGAAAACTTTGAGAGAGCCCTTCTAATTATCAATACTAAGACACGAGTTGATGTTGCATGGCAGGATGGACAAACCGAACTTGGACTGGATTCAACAAGCTTGATTCCAATTGATAATCCAGGTGATCATGAATTTGTTCCAGAACAGTATGTGGTTGAGAAGGCCTCCGATAATGATGATGATGTTAGCGAAAGCAGGCGAGTTGGAGTTGTGAAAAGTGTACATGCAAAGGAGCGAACAGCCTGTGTGAGGTGGTTAAAACCAGTCTCCAGGGCAGAGGATCCTCGAGAATTTGACAAAGAAGAAATTGTTAGTGTATATGAGCTAGAGGGGCATCCAGATTATGACTACTGTTATGGTGACGTGGTTGTTCGATTGTCCCCTGTTTCTGATTCTGCAGAGGCAATGTCTTTGGGAATCAATACAGAGGAATTAAAGCAGCAGAGTTCAACGAATGAGATGATGAGTTGTACAGAGTTCAACAATGCTTCAGGAAGCCAGAAAATAGAAGATACATCATGTAGTGATGATTGCATCGACTTCTCAGATCTCTCTTGGGTTGGAAATATAACTGGCCTTAAGAATGGTGATATTGAAGTTACTTGGGCTAATGGCATGGTTTCAACGGTTGGCCCTCAAGCAATTTATGTTGTTGGTCGAGATGATGATGATGAATCAATTGCTGCTGGTAGTGAAGTAAGTAATGGTGCTGCAAGTTGGGAAACAGTTGACAATGATGAAATGGATTCTGTTGAGAATGCTGCGGAGGATATCGAACTGCAGGATACTGGTGCAAATTCTGAAGAGGAAGAAAGTGAACAGAGTAATTCAGGAAGAAATCTAGCTCTATCTGTTCCACTTGCTGCACTTCGATTTGTTACTAGATTGGCTGCTGGAATATTCTCACGAGGACCAAGAAATCCAGATTCAATGGATTTGGATTCCCACAGTGAAAGTGAGATTCAATCCTTGGATATTCAAGCTTCAGAGGGAAAAGATTCTGGGCTTCAGTCTACCTCTCTTAAATCCAATTCTTTTGATGCTTCTGATATGAACTCTGATTGTGGAAGAGGAGAGGATGGTGTTGCTTCTGAGCCATCAGAAGTGTTAGAATCGGCAAAAACTTCAAGCAATCTGAGGACTGTAGAATTAGATGCTTCAGCATGCCATGAGGATGGTACCTGCAGCTTCAAGGGCTTTGATATAGCTAAAGATCCTTTAGACCATTATTTTCTTGGTACAAATGGACAAACTAACAATGGAAGGAAATGGCTCAAGAAAATCCAGCAAGATTGGAGTATCCTCCAGAATAATTTACCAGATGGAATATATGTTCGAGTCTATGAAGATCGTATGGACCTTTTAAGAGCAGTCATTGTTGGGGCTTACGGGACCCCCTACCAAGATGGTCTCTTCTTCTTCGATTTTCACCTCCCACCAGAATACCCTGATGTTCCTCCATCAGCGTATTATCATTCAGGTGGGTGGCGGATAAATCCCAATCTTTATGAGGAAGGGAAAGTCTGCCTTAGCCTTTTAAATACTTGGACTGGCAGAGGAAATGAAGTGTGGGATCCAAAGTCATCTAGCATCCTTCAAGTGTTGGTCTCGCTTCAGGGATTGGTGTTAAATTCTAAACCATATTTTAATGAAGCTGGATATGACAAGCAAGTTGGAACAGCAGAAGGAGAGAAAAATTCATTGTCGTACAACGAAAACACTTTCTTATTAAACTGCAAGACAATCATGTATCTTATGAGGAAGCCTCCCAAGGACTTTGAAGAACTCATCAAGGAACATTTTAGGAGGCGTGGATATTTCATCCTGAAAGCCTGTGATGCATACATGAAAGGTCACTTAATTGGCTCTCTCACGGAAGATGCTTCTGTAAGAGTAGAAAGTGATCCCAACTCGACATCTGTTGGATTTAAGCTTATGCTCGCTAAGATTGTTCCAAAGCTCTTCTCGTCATTGAACGAAGTCGGAGCTGATTGTCAAGATTTTAAGCATTTTCAACAGTTGTAG 3432 41.32 MMEQQDSVDKESLIGTCNNRDGVSSSDIQITTINNDEARIKNENTSDKPNIPHIYRQDIVKSKGSGMIGIVTEVAGDADSDSDITDDEDEDDDGEDGGNDDECDDNDGDGEKEGQNKENCGDDGNGRHSNGDNYKSQPLPDNEVRVLWMDESETTQHVNDLTVIDRGFVHGDFVAAVSDPTGQAGVVVDVNISVDLLVPDGSIMKDISSKDLKRVRDFTVGDYVVLGPWLGRVDDVLDNVTVMFDDGSKCKVTKAEPLRLKPVSKNTLEDANFPYYPGQRVRATSTVFKNSKWLSGLWKPNRLEGTVTKVTVGSVFIYWIASAGYGPDSSTAPAEEQTPKNLRLLTCFSHANWQLGDWCLLPPSFSAGLTKDPSQTELSVTNTLDCAQSVGACDSEDTVLDELSGTTESTDLDSISACDGNYRNPVDNSLPESSSSRALKETAHETWPLHRKKIRKVVVRRDKKARKKEENFERALLIINTKTRVDVAWQDGQTELGLDSTSLIPIDNPGDHEFVPEQYVVEKASDNDDDVSESRRVGVVKSVHAKERTACVRWLKPVSRAEDPREFDKEEIVSVYELEGHPDYDYCYGDVVVRLSPVSDSAEAMSLGINTEELKQQSSTNEMMSCTEFNNASGSQKIEDTSCSDDCIDFSDLSWVGNITGLKNGDIEVTWANGMVSTVGPQAIYVVGRDDDDESIAAGSEVSNGAASWETVDNDEMDSVENAAEDIELQDTGANSEEEESEQSNSGRNLALSVPLAALRFVTRLAAGIFSRGPRNPDSMDLDSHSESEIQSLDIQASEGKDSGLQSTSLKSNSFDASDMNSDCGRGEDGVASEPSEVLESAKTSSNLRTVELDASACHEDGTCSFKGFDIAKDPLDHYFLGTNGQTNNGRKWLKKIQQDWSILQNNLPDGIYVRVYEDRMDLLRAVIVGAYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLSYNENTFLLNCKTIMYLMRKPPKDFEELIKEHFRRRGYFILKACDAYMKGHLIGSLTEDASVRVESDPNSTSVGFKLMLAKIVPKLFSSLNEVGADCQDFKHFQQL* 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13391253 13401886 - CsaV3_2G016190.1 Csa02g01403 519460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01403 1143 MobiDBLite consensus disorder prediction 1 30 - -
Csa02g01403 1143 MobiDBLite consensus disorder prediction 73 139 - -
Csa02g01403 1143 Pfam Ubiquitin-conjugating enzyme 897 1041 IPR000608 -
Csa02g01403 1143 MobiDBLite consensus disorder prediction 423 442 - -
Csa02g01403 1143 MobiDBLite consensus disorder prediction 79 109 - -
Csa02g01403 1143 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 40 1142 - -
Csa02g01403 1143 Gene3D Ubiquitin Conjugating Enzyme 858 1127 IPR016135 -
Csa02g01403 1143 MobiDBLite consensus disorder prediction 797 820 - -
Csa02g01403 1143 MobiDBLite consensus disorder prediction 423 441 - -
Csa02g01403 1143 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 892 1052 IPR000608 -
Csa02g01403 1143 SUPERFAMILY UBC-like 876 1059 IPR016135 -
Csa02g01403 1143 MobiDBLite consensus disorder prediction 110 129 - -
Csa02g01403 1143 CDD UBCc 895 1045 IPR000608 -
Csa02g01403 1143 MobiDBLite consensus disorder prediction 797 845 - -
Csa02g01403 1143 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 40 1142 - -
Csa02g01403 1143 MobiDBLite consensus disorder prediction 9 30 - -
Csa02g01403 1143 SMART ubc_7 895 1052 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01403 K10581 UBE2O; ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] - csv:101220698 2207.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01403 Csa-Chr2:13391253 Csa04g02346 Csa-Chr4:23910350 1.78E-92 dispersed
Csa02g01403 Csa-Chr2:13391253 Csa06g03628 Csa-Chr6:29240194 7.89E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g177 . . . . . . . . . . Cma02g00267 Cma20g00742 . Car20g00644 . . . . . . . . . . . . . . . . . Cone12ag1239 Cone8ag1294 . . Lsi10g00504 . . . . . . . . . . . . Cmo02g00263 Cmo20g00740 . . . . . Cpe05g01365 Bhi10g01829 . . . Hepe08g0305 . . Cla02g01178 Cam02g1257 Cec02g1266 Cco02g1305 Clacu02g1239 Cmu02g1206 Cre02g1521 . Csa02g01403 . Cme11g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01403 Csa_Chr02 FPKM 6.105208 6.987344 0.096038 0.0 6.050381 5.711153 6.19133 0.0 0.0 0.0