Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01405 ATGTTCTCAGAGTTGATGAACTTTCTGAGAGCTTGTTTTCGACCGAGGTCGGATCGACATGTACACAAAGGTTCCGATGCTGGTGGTCGACAGGATGGTCTCCTATGGTACAAAGATAGTGGGCAGCATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCTAACAATTTACTTGAGGATCAAAGCCAGATGGAGTCAGGCAATTTGAGCTTGCACGAGGCCGGGCCGTATGGTACTTTTGTTGGTGTGTATGATGGGCATGGAGGGCCCGAGACATCTCGTTATGTAAATGATCACCTTTTCCAGCATCTTAAAAGGTTTACTTCAGAGCAACAATCCATGTCAGTGGATGTCATACGGAAGGCATTTCAAGCTACTGAAGAGGGGGTCATTGCTCAAGTTTCAAAACAATGGTCAATGAGGCCACAAATTGCAGCTGTTGGATCTTGCTGCCTTGTTGGTGTAATTTGTGCTGGAACCCTTTACATTGCCAACCTTGGCGATTCACGAGCTGTTTTAGGGAGAGTTGTAAAGGCGACAGGGGAAGTTTTGTCCGTTCAGTTGTCAGCTGAGCATAATGCTTCTATAGAGTCTGTGAGGCAGGAGCTCCGTGCCCTGCATCCTGATGATCCACATATTGTAGTCTTGAAGCATAATGTATGGCGCGTTAAGGGCCTTATACAGGTTTCTCGATCTATTGGCGATGTCTATTTAAAGAGAGCTGAGTTTAACCGAGAGCCTCTTTATGCTAAGTTTCGCCTTCGTGAACCTATCAAAAAGCCCATACTGAGCGCCGAACCATCTATTTCAGTGCTCCAATTGCAGCCACAGGATCAATTTATTATATTTGCTTCAGATGGGCTCTGGGAACACCTTAGCAATCAGGAAGCTGTTGATATTGTCCAAAACCATCCACGTAATGGAAGTGCAAGGAGGCTGGTGAAAGCAGCACTACAAGAGGCAGCAAAGAAGAGAGAAATGAGATACTCAGATTTGAAGAAGATTGACCGGGGGGTACGGCGACATTTCCACGATGACATCACAGTGATTGTTGTTTTTCTCGACTCAAACCTTGTGAGCCGAGCTAGCTCTACAAAATGTGCAAGCCTATCAGTGCGAGGGGGTGGAGTTAACTTACGTCCAAACTCATTGGCCCCCTGCACCACACCATCAGACACTGGCATGGCCTGA 1194 46.65 MFSELMNFLRACFRPRSDRHVHKGSDAGGRQDGLLWYKDSGQHANGEFSMAVVQANNLLEDQSQMESGNLSLHEAGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRFTSEQQSMSVDVIRKAFQATEEGVIAQVSKQWSMRPQIAAVGSCCLVGVICAGTLYIANLGDSRAVLGRVVKATGEVLSVQLSAEHNASIESVRQELRALHPDDPHIVVLKHNVWRVKGLIQVSRSIGDVYLKRAEFNREPLYAKFRLREPIKKPILSAEPSISVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRNGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSTKCASLSVRGGGVNLRPNSLAPCTTPSDTGMA* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13428092 13432415 + CsaV3_2G016210.1 Csa02g01405 519462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01405 397 PANTHER ALPHABET, ISOFORM E-RELATED 5 387 - -
Csa02g01405 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Csa02g01405 397 Gene3D - 36 367 IPR036457 -
Csa02g01405 397 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 387 - -
Csa02g01405 397 Pfam Protein phosphatase 2C 79 324 IPR001932 -
Csa02g01405 397 CDD PP2Cc 48 355 IPR001932 -
Csa02g01405 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Csa02g01405 397 SUPERFAMILY PP2C-like 59 356 IPR036457 -
Csa02g01405 397 SMART PP2C_4 39 353 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01405 Csa07g00117 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01405 Csa-Chr2:13428092 Csa03g00055 Csa-Chr3:498307 0 dispersed
Csa03g03575 Csa-Chr3:31923090 Csa02g01405 Csa-Chr2:13428092 9.15E-153 transposed
Csa06g01866 Csa-Chr6:16831535 Csa02g01405 Csa-Chr2:13428092 2.05E-158 transposed
Csa07g00118 Csa-Chr7:1052155 Csa02g01405 Csa-Chr2:13428092 1.51E-159 transposed
Csa07g00698 Csa-Chr7:4993281 Csa02g01405 Csa-Chr2:13428092 3.28E-146 transposed
Csa02g01405 Csa-Chr2:13428092 Csa06g03363 Csa-Chr6:28014814 0 wgd
Csa02g01405 Csa-Chr2:13428092 Csa07g00117 Csa-Chr7:1051293 2.81E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01405 - - csv:101221640 792.341