Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g01405 | ATGTTCTCAGAGTTGATGAACTTTCTGAGAGCTTGTTTTCGACCGAGGTCGGATCGACATGTACACAAAGGTTCCGATGCTGGTGGTCGACAGGATGGTCTCCTATGGTACAAAGATAGTGGGCAGCATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCTAACAATTTACTTGAGGATCAAAGCCAGATGGAGTCAGGCAATTTGAGCTTGCACGAGGCCGGGCCGTATGGTACTTTTGTTGGTGTGTATGATGGGCATGGAGGGCCCGAGACATCTCGTTATGTAAATGATCACCTTTTCCAGCATCTTAAAAGGTTTACTTCAGAGCAACAATCCATGTCAGTGGATGTCATACGGAAGGCATTTCAAGCTACTGAAGAGGGGGTCATTGCTCAAGTTTCAAAACAATGGTCAATGAGGCCACAAATTGCAGCTGTTGGATCTTGCTGCCTTGTTGGTGTAATTTGTGCTGGAACCCTTTACATTGCCAACCTTGGCGATTCACGAGCTGTTTTAGGGAGAGTTGTAAAGGCGACAGGGGAAGTTTTGTCCGTTCAGTTGTCAGCTGAGCATAATGCTTCTATAGAGTCTGTGAGGCAGGAGCTCCGTGCCCTGCATCCTGATGATCCACATATTGTAGTCTTGAAGCATAATGTATGGCGCGTTAAGGGCCTTATACAGGTTTCTCGATCTATTGGCGATGTCTATTTAAAGAGAGCTGAGTTTAACCGAGAGCCTCTTTATGCTAAGTTTCGCCTTCGTGAACCTATCAAAAAGCCCATACTGAGCGCCGAACCATCTATTTCAGTGCTCCAATTGCAGCCACAGGATCAATTTATTATATTTGCTTCAGATGGGCTCTGGGAACACCTTAGCAATCAGGAAGCTGTTGATATTGTCCAAAACCATCCACGTAATGGAAGTGCAAGGAGGCTGGTGAAAGCAGCACTACAAGAGGCAGCAAAGAAGAGAGAAATGAGATACTCAGATTTGAAGAAGATTGACCGGGGGGTACGGCGACATTTCCACGATGACATCACAGTGATTGTTGTTTTTCTCGACTCAAACCTTGTGAGCCGAGCTAGCTCTACAAAATGTGCAAGCCTATCAGTGCGAGGGGGTGGAGTTAACTTACGTCCAAACTCATTGGCCCCCTGCACCACACCATCAGACACTGGCATGGCCTGA | 1194 | 46.65 | MFSELMNFLRACFRPRSDRHVHKGSDAGGRQDGLLWYKDSGQHANGEFSMAVVQANNLLEDQSQMESGNLSLHEAGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRFTSEQQSMSVDVIRKAFQATEEGVIAQVSKQWSMRPQIAAVGSCCLVGVICAGTLYIANLGDSRAVLGRVVKATGEVLSVQLSAEHNASIESVRQELRALHPDDPHIVVLKHNVWRVKGLIQVSRSIGDVYLKRAEFNREPLYAKFRLREPIKKPILSAEPSISVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRNGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSTKCASLSVRGGGVNLRPNSLAPCTTPSDTGMA* | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 13428092 | 13432415 | + | CsaV3_2G016210.1 | Csa02g01405 | 519462 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g01405 | 397 | PANTHER | ALPHABET, ISOFORM E-RELATED | 5 | 387 | - | - | |
Csa02g01405 | 397 | ProSitePatterns | PPM-type phosphatase domain signature. | 81 | 89 | IPR000222 | GO:0043169 | |
Csa02g01405 | 397 | Gene3D | - | 36 | 367 | IPR036457 | - | |
Csa02g01405 | 397 | PANTHER | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN | 5 | 387 | - | - | |
Csa02g01405 | 397 | Pfam | Protein phosphatase 2C | 79 | 324 | IPR001932 | - | |
Csa02g01405 | 397 | CDD | PP2Cc | 48 | 355 | IPR001932 | - | |
Csa02g01405 | 397 | ProSiteProfiles | PPM-type phosphatase domain profile. | 47 | 355 | IPR001932 | - | |
Csa02g01405 | 397 | SUPERFAMILY | PP2C-like | 59 | 356 | IPR036457 | - | |
Csa02g01405 | 397 | SMART | PP2C_4 | 39 | 353 | IPR001932 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa02g01405 | Csa07g00117 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01405 | Csa-Chr2:13428092 | Csa03g00055 | Csa-Chr3:498307 | 0 | dispersed | |
Csa03g03575 | Csa-Chr3:31923090 | Csa02g01405 | Csa-Chr2:13428092 | 9.15E-153 | transposed | |
Csa06g01866 | Csa-Chr6:16831535 | Csa02g01405 | Csa-Chr2:13428092 | 2.05E-158 | transposed | |
Csa07g00118 | Csa-Chr7:1052155 | Csa02g01405 | Csa-Chr2:13428092 | 1.51E-159 | transposed | |
Csa07g00698 | Csa-Chr7:4993281 | Csa02g01405 | Csa-Chr2:13428092 | 3.28E-146 | transposed | |
Csa02g01405 | Csa-Chr2:13428092 | Csa06g03363 | Csa-Chr6:28014814 | 0 | wgd | |
Csa02g01405 | Csa-Chr2:13428092 | Csa07g00117 | Csa-Chr7:1051293 | 2.81E-55 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g01405 | - | - | csv:101221640 | 792.341 |