Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01406 ATGGGTTGTGTTGCCTCAAAGTTAGAGGAGGAAGAAGAAGTAGTTTCCATTTGTAGAGAAAGAAAACGCCATTTAAAGTTAGCTGTTGAGAGAAGGTATGCTCTTGCAGAAGCACATTGTAAATATTGTCAAGCTTTATATGCTGTTTCAGCTGCCATTAAACTCTTTGTAGCTCGCCATTCATCTCCTTCTCCTTTCCTCATTACATTCCCTCCTCCCTCTCCTCCTTCTGAAAAAGTTATAACCAATCCAATGTTTCTTCAGCAAATGCCTTCTGATTCCACTCATGAAACCATAGCCACCTGCCCTTCTTGTATTTCTTCTTCTTCAACCTCTTCACAATCCTCCATTGAAGAAAGAGAAGAAGAATCAGTAGAAGAGGAGAGGATCGAACAAGTTCCTCCTTATTTCTACATGCAAATGCCACCCCCAATGCCATCCCCTCAAAGGGAGTTTGGATGGGATTTCTTCAATCCATTTGAGTCAATGAGGACTGATGTCGTCGGCGAATATCGCGAGGATGAGCTCAGGATGGTGAGGGAGGAAGAAGGAATTCCAGAGTTGGAAGAAGCCGAGGTAGAGAAAGAAGATGGAAACCAGAGAGTTGTGGCTGTTGCTGAGGAGGAAAATGTTGGAGCTTTTAGAGAGCAGAGGAATGGAGTTGAAGTGATTAAAGTTGGAGACAAGGAAGATGAGGGTCAATTTAAGCAGAAAGGGCTAACAGTCATTGATACACCAGTTGAAGGAAGGGAGCTTTTGGAAGCATTACAAGACGTTGAGGATTATTTTATCAGGGCTTATGATTCTGGAGTTGATATTTCTAGGATGTTAGAGGCTAACAAAATTCAACTTCAATCTGGTTTAGAAGAAATTAAAGAAAACTCGACGAAACTCATCCAAGCGATTACCTGGCACCGTTCTGTTTCGGGCAAGCCTTCATCATGTAAAAGTCTAGTAGCATCGAGTTCAAAAGGTTCTCCAGCATGGACAGAGTTTAAGAATGAGCTGTTTGATGATTACGATGTAATGGACTCAGGAAGTCATTCTTCGACTCTTGGACGATTATATGCTTGGGAGAAGAAGCTCTACGAAGAGGTCAAGGCTGGGGACAGCATGCGCAAACTGTATGAGAAAAGGTGCTCGCGACTAAGGAACCAAGACGTTAAAGGGGATAATGGAGTTAGTACCGATAAAACTCGAGTTGCAGTAAAGGATTTATATGCCAGGATCTTGGTTGCCATACGGAGTGCAGAATCGATCTCGACAAGAATTGAGAAACTAAGAGACGACGAGCTACAACCTCAGATTATTGAGCTATTAAAAGGCTTAACAAGATCATGGAAAATCATGTTGGAAGTTCATGAAACCCAGAAAAAGATAATTCTTGAAGTGAAGACTTATTCCTGTCATTCCTATCTGAAGTTCTGTAACGAATCTCATCGTCTTGCAACTCTTCAGCTTGGGGCTGAGCTCCAAAACTGGCGTTCGTGTTTTTCAAAATATGTTGAATCACAAAAGGCTTACGTTGAAGCTCTCCATGGATGGCTGACCAAGTTCGTAGTGCCTGAGGTTGAGTTCTACTCTCGGGGTCGAGCATCAGCTGTGCCGTATGGGCTGCACGGACCTCCATTGCTTTCAATCTGCCACAATTGGCTATCTTCCATGGAAAAGTTACCTGATAAACCAGTTGCCTTTGCATTGAAAAGTTTTGCAAAAGATATGAAAGCTCTATCAGATATACAGATGGAGGAGCAACACCAAAAGAGAAGAGTCGAAAGTCTCGGAAAGGAACTTGACCGAAGGATCTTGTCATTACAGAAAACAGAGAACAAGTTCTTTGAGTTCAACTTTACCGAGACGAAATCAGAGTTGGAAGTGGAAAATCAGAACGAGTACTTAACCGAAAAGAAAGATCAGCTGGACTTGTTCAAAAAGAAGCTTGATTTGGAGAAGGAAAAACACAACAACTGCATTCAAGAAGCTCAAAGGATTACATTAAATGGAATCCAAACAGGGTTTTCTACAGTTTTTGAATCGTTATCCGAGTTCTCCAAGGCGTCCCAAAAAATGTACGACCACCTTGTGAATTACAGTGAGAATGCCAATAAATCTGAAAACATAAACTATATTGAGGGCTCCTCACAAACTGAAGAAAATGTTGGCAGATAA 2169 41.77 MGCVASKLEEEEEVVSICRERKRHLKLAVERRYALAEAHCKYCQALYAVSAAIKLFVARHSSPSPFLITFPPPSPPSEKVITNPMFLQQMPSDSTHETIATCPSCISSSSTSSQSSIEEREEESVEEERIEQVPPYFYMQMPPPMPSPQREFGWDFFNPFESMRTDVVGEYREDELRMVREEEGIPELEEAEVEKEDGNQRVVAVAEEENVGAFREQRNGVEVIKVGDKEDEGQFKQKGLTVIDTPVEGRELLEALQDVEDYFIRAYDSGVDISRMLEANKIQLQSGLEEIKENSTKLIQAITWHRSVSGKPSSCKSLVASSSKGSPAWTEFKNELFDDYDVMDSGSHSSTLGRLYAWEKKLYEEVKAGDSMRKLYEKRCSRLRNQDVKGDNGVSTDKTRVAVKDLYARILVAIRSAESISTRIEKLRDDELQPQIIELLKGLTRSWKIMLEVHETQKKIILEVKTYSCHSYLKFCNESHRLATLQLGAELQNWRSCFSKYVESQKAYVEALHGWLTKFVVPEVEFYSRGRASAVPYGLHGPPLLSICHNWLSSMEKLPDKPVAFALKSFAKDMKALSDIQMEEQHQKRRVESLGKELDRRILSLQKTENKFFEFNFTETKSELEVENQNEYLTEKKDQLDLFKKKLDLEKEKHNNCIQEAQRITLNGIQTGFSTVFESLSEFSKASQKMYDHLVNYSENANKSENINYIEGSSQTEENVGR* 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13436249 13440821 + CsaV3_2G016220.1 Csa02g01406 519463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01406 722 MobiDBLite consensus disorder prediction 102 129 - -
Csa02g01406 722 PANTHER OS09G0542500 PROTEIN 1 706 - -
Csa02g01406 722 Coils Coil 188 208 - -
Csa02g01406 722 Coils Coil 633 653 - -
Csa02g01406 722 Pfam Protein of unknown function (DUF632) 252 575 IPR006867 -
Csa02g01406 722 PANTHER UNCHARACTERIZED 1 706 - -
Csa02g01406 722 Pfam Protein of unknown function (DUF630) 1 60 IPR006868 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01406 - - - csv:101207270 1292.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01406 Csa-Chr2:13436249 Csa04g00472 Csa-Chr4:2959833 3.78E-69 dispersed
Csa02g01406 Csa-Chr2:13436249 Csa07g02230 Csa-Chr7:20951834 1.84E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g188 . . Bda06g00474 Bda08g00983 . . . . . . Cma02g00270 Cma20g00739 . Car20g00641 . . . . . . . . . . . . . . . . . . . . . Lsi10g00507 . Chy11g00243 . . . . . . . . . . Cmo02g00267 Cmo20g00736 . . . . Cpe16g00326 Cpe05g01362 . . . . . . . Cla02g01182 Cam02g1259 Cec02g1270 Cco02g1308 Clacu02g1241 Cmu02g1208 Cre02g1523 . Csa02g01406 . Cme11g00366
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007141 2 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01406 Csa_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0