Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01408 ATGATTCTGATTGGGTCTACTTTGGGAATTGGAAGTTCCATCTCCTACAAACCTCATTTCTCGAACAGTTTGCGAACTGGGTTTTACATTAAAGCTTATTCTAAACACCTATGTTTTAATGGAGGAGAGGATGGAAAGAAGAAAAGGGTCGTCGTCGTCGGCTCCGGTTGGGCTGGCCTTGCCGCTGCTAATCACCTCTGCAATCAGGGATTTGATACCACTGTTCTTGAACCAAGCAATAATTTTGGTGGTGCTGATATTCATGGAATTCGTGGTTACTGGCGTCCCTATAAGAATATATTTGGCCTTGTTGATGAGCTTGGTATCGCTCCTTTCACAAACTGGACAGCACCTGCTCATTATTCAGTTGACGGGTTGGAGGTAAAATTTCCACTATTCCAAGATCTGCCTCAACTGCCAACGCCTCTCGGAACCTTAATTTATCCAGAATTCCCCCAGCTCCCGTTGGTGGATAGGTTAACATCACTTCCTTTGATGGCTGCAGTTATTGACTTTGACAATACGGATACGGCATGGAGAAAATATGACTCAATTACCGCCAGGGAGCTATTCAGGCAGTTTGGCTGTTCAGAAAAGCTCTATAGTAGCATACTCAATCCATTGCTTCAAGTAGGATTATATGCTCCAGCCGAGCAGTGCAGTGCTGCAGCAACCTTGGGAATTTTATACTACACTATCCTTGCTCACCAGAATGATTTCAATCTAGTTTGGTGCCGTGGAACTGCTAAAGAAATGATTTTCCAGCCATGGATAGACTTGCTGGAGAGCAAGGGATGTAGATTTGTTGGGAGTAGAAAAATAACAGATGTAACTGTAGATGATGAAACAAACTGTCTATCGGACATTCTTTGTGGCAGAGAAAGATATGAGGCCGATGCAATTGTATTTGCTGTTGGAATTTCTGTACTCCAAGAACTCATTCGTAATTCTGCAGCATTATACACAAAAGAGGAGTTCGTCAAGGTTTTAAACTTGAGAAGTGTTGATTTGCTCACTGTTAAACTTTGGTTTGATAGAAAAGTAAATATTCCAACTGCAAGTAATTCTTGCTCGACCTTGGATAATTCATTTGGGTGGAGTTTCTTCAACTTAAATGCCATTCAAGACGAATACAAAGACGAATCAGTTACAGTGTTGCAAGCTGACTTTTATCACGCCATAGAGCTGTTGCCACTAAATGATGAAGCTATCGTTGAAAAGGTCAAATCTTACCTCTCAACATGCATTAAAGACTTTGAGAATGCCATCGTGGTGAAGAAGGAAATCGGAAGGTTTCCAGAATCATTAACTCACTTCTTTCCTGGTTCATACAAATACATGATGCGCGGCTTTACATCGTTCCCAAACGTGTTCATGGCTGGAGATTGGATCATAAACCGTCACGGATCGTGGTCACAGGAGAAATCATATGTGACTGGCCTTGAAGCTGCAAATAGAGTGGTGGATTTTCTTGAAGAAGGAAGTTTTGCTAAAATTGTGCCAGTAGAGGAAGATGAGCCTCATGTGGAGGCTCTTCGTGGTCTCAATAGAAGGATTGATGAGATTAGATCCCAACTCCCATTCAACGGGTTCTTCCTCTAA 1602 42.13 MILIGSTLGIGSSISYKPHFSNSLRTGFYIKAYSKHLCFNGGEDGKKKRVVVVGSGWAGLAAANHLCNQGFDTTVLEPSNNFGGADIHGIRGYWRPYKNIFGLVDELGIAPFTNWTAPAHYSVDGLEVKFPLFQDLPQLPTPLGTLIYPEFPQLPLVDRLTSLPLMAAVIDFDNTDTAWRKYDSITARELFRQFGCSEKLYSSILNPLLQVGLYAPAEQCSAAATLGILYYTILAHQNDFNLVWCRGTAKEMIFQPWIDLLESKGCRFVGSRKITDVTVDDETNCLSDILCGRERYEADAIVFAVGISVLQELIRNSAALYTKEEFVKVLNLRSVDLLTVKLWFDRKVNIPTASNSCSTLDNSFGWSFFNLNAIQDEYKDESVTVLQADFYHAIELLPLNDEAIVEKVKSYLSTCIKDFENAIVVKKEIGRFPESLTHFFPGSYKYMMRGFTSFPNVFMAGDWIINRHGSWSQEKSYVTGLEAANRVVDFLEEGSFAKIVPVEEDEPHVEALRGLNRRIDEIRSQLPFNGFFL* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13445341 13449702 + CsaV3_2G016240.1 Csa02g01408 519465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01408 533 Gene3D - 44 369 IPR036188 -
Csa02g01408 533 PANTHER PROTOPORPHYRINOGEN OXIDASE 31 509 - -
Csa02g01408 533 SUPERFAMILY FAD/NAD(P)-binding domain 46 491 IPR036188 -
Csa02g01408 533 Pfam Flavin containing amine oxidoreductase 58 487 IPR002937 GO:0016491
Csa02g01408 533 PANTHER OS04G0560500 PROTEIN 31 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01408 - - - csv:101207523 1068.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01408 Csa-Chr2:13445341 Csa04g00269 Csa-Chr4:1658247 1.71E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g190 . . . Bda08g00982 . . . . . . . Cma20g00737 . Car20g00639 . . . . . . . . . . . . . . . . . . . . . Lsi10g00509 . Chy11g00241 . . . . . . Bpe05g00298 . . . . Cmo20g00734 . . . . Cpe16g00329 . . . . . . . . Cla02g01184 Cam02g1261 Cec02g1272 Cco02g1310 Clacu02g1243 Cmu02g1210 Cre02g1525 . Csa02g01408 . Cme11g00364
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011350 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 4 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01408 Csa_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0