Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01410 ATGGGTGCTCAAACCAACACTCAAAGATCCTTCTCAAAACTTTCTAAGTCTCTTCCAACTCTAAAACATCTCTTTGATCATGATCCATTCACCAACAAACCCTTTGGCTTAACTAATATTGTTCTTCAAGACGAAATTCTTTCCATCATTTCCTTTTGCTCTTCCATGGCACTACCAACTACTTCTCATGAATTGAAAAGATTCAAACTTACTCATCTTTTCACCGTCATTAAAACATCAAAGAAACCGTTACACCGTGACGTTTTATCGTCGGTGATGTCGTTGATATCCATTAATCTCTTTCGTCCACTCCCTCCCCCTTCCCCGGCTTTTCCAATCACATCCTCGACCCTTGCTGAAGAAAACGAAGTCGTTGTCTGCTCCACCATTCCTTCTCTCAACTGGCTGCAACTTGAAGTTGTTTATGATATCCTCTTGTGGCTAGTAATCAACATTGATACTCAAACACTTGAGAAACATATAGATAAAACTTTTCTTCTCGGACTTCTTTCGCTATTCGATTCGGATGAATCGAAGGAACGAGAGAGTTTGAAGAATGTTTTTCATCAAATGTATTACAAGTTCACAAAGTATAGATCATTCATGAGAAAAGCAATGAGTGGTGTGTTTTTGGAGTATATTTTTGAAACAGAGAGGCATAATGGGATAGCTGAGATGCTTGAGATTTGGGGAAGCATAATCAATGGTTTTGCAGTTCCATTGAAGGAAGAACACAAAGTTTTTTTGAAAAGGATATTGATTCCTTTACATAAGGTTAAAGGAATGCAGAGTTTCAACAAGCAATTGAGTTATTGTGTTTATCAATTTGTGGAGAAGGAGAGTGAGCTTGGTGGGTTCATAGTGAGAAAGATTATGAAGTATTGGCCTCAAGCTAATAGTCAAAAAGAGATAAAGTTGATTGAGGAATTGGAGGATTTAGTGGAGAAATTGGATCCCAAACTATATAGGGATTTGGCTTTGCCCTTTTGTTCACACATGACCAAATGTTTCAAGAGTTTGAACTCCATGGTGGCGGAGCGAGCTCTATACATATGGAATAGCGAAGCATTTGTGACGATGGTATATAGCGCCATGGAAGAAGTATTTCCAGTAATTATAAGAGGAATGGAAAACATTATTACGAGTCATTGGAACGAAAACATTAAAGAATTGGCACATAATGTGAAGGCCATTCTTCAAGAAATGAATCCAATTCTTTATCACAAAACTCTCCATCAAAACCGCTTTAAATATTTCGAAGCAACCCAAATTCACAGATTGTAA 1284 37.54 MGAQTNTQRSFSKLSKSLPTLKHLFDHDPFTNKPFGLTNIVLQDEILSIISFCSSMALPTTSHELKRFKLTHLFTVIKTSKKPLHRDVLSSVMSLISINLFRPLPPPSPAFPITSSTLAEENEVVVCSTIPSLNWLQLEVVYDILLWLVINIDTQTLEKHIDKTFLLGLLSLFDSDESKERESLKNVFHQMYYKFTKYRSFMRKAMSGVFLEYIFETERHNGIAEMLEIWGSIINGFAVPLKEEHKVFLKRILIPLHKVKGMQSFNKQLSYCVYQFVEKESELGGFIVRKIMKYWPQANSQKEIKLIEELEDLVEKLDPKLYRDLALPFCSHMTKCFKSLNSMVAERALYIWNSEAFVTMVYSAMEEVFPVIIRGMENIITSHWNENIKELAHNVKAILQEMNPILYHKTLHQNRFKYFEATQIHRL* 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13474343 13476352 - CsaV3_2G016260.1 Csa02g01410 519467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01410 427 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 421 - -
Csa02g01410 427 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 59 413 IPR002554 GO:0000159|GO:0007165|GO:0019888
Csa02g01410 427 Gene3D - 44 424 IPR011989 -
Csa02g01410 427 SUPERFAMILY ARM repeat 52 417 IPR016024 -
Csa02g01410 427 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 421 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01410 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' - csv:101207767 820.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01410 Csa-Chr2:13474343 Csa06g02615 Csa-Chr6:23011958 1.91E-91 dispersed
Csa02g01410 Csa-Chr2:13474343 Csa02g02344 Csa-Chr2:20819036 1.21E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g207 . . Bda06g00472 . . . . Bma12g00914 . . Cma02g00274 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g00238 . . . . . . . . . . Cmo02g00271 . . . . . . Cpe05g01358 . . . . . . . Cla02g01186 Cam02g1264 Cec02g1275 Cco02g1312 Clacu02g1247 Cmu02g1213 Cre02g1528 . Csa02g01410 . Cme11g00360
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013203 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01410 Csa_Chr02 FPKM 7.948373 8.292069 20.468603 20.419727 22.517181 25.452324 23.005047 20.749775 20.410444 18.296722