Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01413 ATGAAATTAGCTCACCCTCCTTTGAGCTTCTTCTTCATTTTCTTTCTTCCTTTATTCTTTACATTCTTTACAGCCACTGCTTTAACGTTTGATTCCTACATTCCATACCGGAGAATTCTGCATCAGCCGCTCTTTCCTATAGGCTCTGAGCCACCGCCGGAGATTGAGTTCTCTCCACCTCCACCACCTCCGCCGGATTCTCCTGCCGATGATCAACCATTTTTCCATGAGCTACCGACGACTCCAGATCAGAGTCAACCGCCTCCGTCCTCCAGTAATGGAACTATGCCTATCCCGGCTGCTACGGCGCAGCCGTCTAAGCCTACCAAGACTGTTGCGATTGCCATTTCGGTTGGGATTGTGACTTTGGGGATGCTTTCGGCTCTTGCCTTCTTTTTGTATCGTCATCGTGCGAAGCATCCCGGGGAGTCGCAGAAGCTTGTTGGAGGGAGTAATAATCCGGAGAGATTTGTGGAGGATTCGAGAGCGCCTCCTTCGAGTTTTTTTTATATTGGAACTGTTGAGCCGAGTCAGAGCTCTGTTGTGGAGCAGAATGGTGCTAATGGTGCTAATAGTTCGCCTTATCGGAAGCTGAATTCGATTAAGAGGTCGGATCGGTATCGTCCGAGTCCGGAGTTGCAGCCACTACCGCCTTTGCCTAAGCCGCCGGTGGCTATGTCGCCTCCGGCTTTGTCATCTTCTGATGAGGAAAGTCTGGATACGGCATTTCATACTCCACAATGCTCGTCGATTGTTAGTCATGAGGATGGCTATTTTTCACCGGCTTCTCGTCGGAGTAATTCGGTTAAGAGCTGTTCAGCGGCGAGTTATAAGAATGACCATATGAATTCCAATCCTCCTCCTCCCATTCCGCATTCCAAAAGAACCTCTCCTAAATCGAGATTTTCGGTTTCTTCGACGAAGCGTAAATCGTCTCAGCCTCAGCCACCGCCACCGCCTCCTCCTCCACCGCGTCAGTTTGATGATTTTCGTGATACTCCGAATTCGAAAGAAACAATGCCTTTCTCTGCCACGAGACCTAGATTTTCGAAGCCTCCTCCTCCGCCGAATTTGGCGCTTCTTCAAACAATTAGCAATACAGCTACATTTCCTCAAGTTCCGCAACCTGCTGGAGCTCCACCTCCGCCTCCGCCGCCTCCTCCCCCACCTCCACCTCCACGGCCGTCGGCGCGTCCGGCCTCTTATTCAACACCACAAAAACTAGGGTTGTCAGAAAACAGAATGTCGGCAGTCACTCCTCCAGACTCCTCTAAATCACAATCCTACTCAACAGCGAGATCAAACTCATCTCCGAAATCCACACCGAGTTCTACGGCAACAAATTCTGCTAAAGAAGACGCTGTCCCAAGCACTAATTCTATGGAGAGGCTGGAAGCAGAAGATGCAGATGGTGCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGAGCAACATCAGACCGAGCTACGGTCTGGGATCAACTTAAATCAAGCTCATTCCAATTAAACGAGGATATGATGGAGACACTTTTTGGCTTCAATTCTGCAAATTCTGTTCCCAAAGAAGCCACGAGAAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAACAGAGTATTAGACCCAAAAAAATCGCAGAACATAGCAATACTTCTAAGAGCACTTAATGTCACGCGTGATGAAGTGATCGAAGCTCTTCAAGATGGTAACCCAGAAGGCTTTGGTACTGAGCTCTTAGAAACTCTTGTAAAGATGGCTCCAACCAAAGAGGAAGAGATAAAACTTAGAGAGTACTGTGGTGATGCTTCAAAATTAGGGACTGCCGAAAGATTTCTCAAGTCAGTGCTTGAAGTTCCATTTGCCTTTAGAAGAGTTGAGGCAATGCTGTACAGAGCCAATTTTGATTCAGAAGTAAAGTACCTGAGAAAATCTTTCCAAACCCTTGAGGGTGCAAGTGAAGAATTAAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCAGTTCTAAAGACAGGAAATAGGATGAATGTTGGTACAAATCGCGGTGATGCTAAAGCCTTTAAGCTTGAAACCCTCTTAAAATTAGTAGATATAAAGGGAACAGATGGAAAAACAACATTGCTTCATTTTGTTGTTCAAGAAATCATCAGATCAGAAGGTGGTGCTGATTCAACTAATGACAACCTTCAACCCCGTACCCAAGCTAAAATCGAGGATGAATTCAGAAAGCAGGGCTTGCAAGTTGTGGCTGGACTAAGCAGAGACCTCACCAATGTCAAAAAAGCAGCAGGGATGGACTCAGACGTCTTGAGCAGTTATGTCACAAAGCTCGAAATGGGGCTCGAAAAAGTAAGGTTGGTCTTACAATTCGAAAAGCCAGGAATGCAGGGAAAATTCTTTAACTCAATGAAAACATTCTTGAAAGAGGCAGAAGAGGAAATAGTCAGGATCAAGGCTGATGAAAAACAAGCTTTAACGCTCGTGAAAGCAGTGACGGAGTATTTCCATGGCGATGCAGCTAAGGAAGAAGCCCACCCCTTCCGAATCTTCATGATCGTTCGGGATTTCCTAACCATACTCGATCAAGTATGCAAAGAAGTCGGGAGAATGCAGGACGGAGTAATGGTCGGTGCTGCTCGATCCTTTCGAATATCCGCTACAGCCTCACTCCCAGTCCTCAGCAGGTATAATGTCAGACATGACCGAAGCTCCGACGAGGATAGCTCATCTCCGTGA 2739 46.77 MKLAHPPLSFFFIFFLPLFFTFFTATALTFDSYIPYRRILHQPLFPIGSEPPPEIEFSPPPPPPPDSPADDQPFFHELPTTPDQSQPPPSSSNGTMPIPAATAQPSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGSNNPERFVEDSRAPPSSFFYIGTVEPSQSSVVEQNGANGANSSPYRKLNSIKRSDRYRPSPELQPLPPLPKPPVAMSPPALSSSDEESLDTAFHTPQCSSIVSHEDGYFSPASRRSNSVKSCSAASYKNDHMNSNPPPPIPHSKRTSPKSRFSVSSTKRKSSQPQPPPPPPPPPRQFDDFRDTPNSKETMPFSATRPRFSKPPPPPNLALLQTISNTATFPQVPQPAGAPPPPPPPPPPPPPPRPSARPASYSTPQKLGLSENRMSAVTPPDSSKSQSYSTARSNSSPKSTPSSTATNSAKEDAVPSTNSMERLEAEDADGAKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKEATRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDASKLGTAERFLKSVLEVPFAFRRVEAMLYRANFDSEVKYLRKSFQTLEGASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTNDNLQPRTQAKIEDEFRKQGLQVVAGLSRDLTNVKKAAGMDSDVLSSYVTKLEMGLEKVRLVLQFEKPGMQGKFFNSMKTFLKEAEEEIVRIKADEKQALTLVKAVTEYFHGDAAKEEAHPFRIFMIVRDFLTILDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNVRHDRSSDEDSSSP* 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13503958 13508431 + CsaV3_2G016290.1 Csa02g01413 519470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01413 912 MobiDBLite consensus disorder prediction 183 198 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 87 105 - -
Csa02g01413 912 PANTHER FORMIN-LIKE PROTEIN 6 11 912 - -
Csa02g01413 912 Pfam Formin Homology 2 Domain 470 861 IPR015425 -
Csa02g01413 912 Coils Coil 808 828 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 50 105 - -
Csa02g01413 912 PANTHER FORMIN-RELATED 11 912 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Csa02g01413 912 MobiDBLite consensus disorder prediction 50 70 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 296 311 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 183 475 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 211 227 - -
Csa02g01413 912 ProSiteProfiles Formin homology-2 (FH2) domain profile. 466 887 IPR015425 -
Csa02g01413 912 Gene3D Formin, FH2 domain 460 872 IPR042201 -
Csa02g01413 912 MobiDBLite consensus disorder prediction 142 161 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 400 456 - -
Csa02g01413 912 SUPERFAMILY Formin homology 2 domain (FH2 domain) 383 872 - -
Csa02g01413 912 SMART it6_source 466 876 IPR015425 -
Csa02g01413 912 MobiDBLite consensus disorder prediction 231 283 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 374 399 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 312 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01413 Csa-Chr2:13503958 Csa01g00260 Csa-Chr1:1613373 5.16E-32 dispersed
Csa03g02724 Csa-Chr3:26029083 Csa02g01413 Csa-Chr2:13503958 5.36E-31 dispersed
Csa04g02634 Csa-Chr4:25716565 Csa02g01413 Csa-Chr2:13503958 9.03E-30 dispersed
Csa01g02771 Csa-Chr1:24487800 Csa02g01413 Csa-Chr2:13503958 3.84E-130 transposed
Csa02g02708 Csa-Chr2:23598171 Csa02g01413 Csa-Chr2:13503958 1.43E-128 transposed
Csa03g02281 Csa-Chr3:20297910 Csa02g01413 Csa-Chr2:13503958 8.75E-124 transposed
Csa03g02718 Csa-Chr3:25959151 Csa02g01413 Csa-Chr2:13503958 1.26E-175 transposed
Csa05g00980 Csa-Chr5:8967816 Csa02g01413 Csa-Chr2:13503958 2.91E-171 transposed
Csa05g02377 Csa-Chr5:25983345 Csa02g01413 Csa-Chr2:13503958 1.07E-93 transposed
Csa06g02244 Csa-Chr6:20168345 Csa02g01413 Csa-Chr2:13503958 7.30E-94 transposed
Csa02g01413 Csa-Chr2:13503958 Csa06g03019 Csa-Chr6:26002544 4.33E-16 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01413 - - csv:101208011 1532.31