Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01413 ATGAAATTAGCTCACCCTCCTTTGAGCTTCTTCTTCATTTTCTTTCTTCCTTTATTCTTTACATTCTTTACAGCCACTGCTTTAACGTTTGATTCCTACATTCCATACCGGAGAATTCTGCATCAGCCGCTCTTTCCTATAGGCTCTGAGCCACCGCCGGAGATTGAGTTCTCTCCACCTCCACCACCTCCGCCGGATTCTCCTGCCGATGATCAACCATTTTTCCATGAGCTACCGACGACTCCAGATCAGAGTCAACCGCCTCCGTCCTCCAGTAATGGAACTATGCCTATCCCGGCTGCTACGGCGCAGCCGTCTAAGCCTACCAAGACTGTTGCGATTGCCATTTCGGTTGGGATTGTGACTTTGGGGATGCTTTCGGCTCTTGCCTTCTTTTTGTATCGTCATCGTGCGAAGCATCCCGGGGAGTCGCAGAAGCTTGTTGGAGGGAGTAATAATCCGGAGAGATTTGTGGAGGATTCGAGAGCGCCTCCTTCGAGTTTTTTTTATATTGGAACTGTTGAGCCGAGTCAGAGCTCTGTTGTGGAGCAGAATGGTGCTAATGGTGCTAATAGTTCGCCTTATCGGAAGCTGAATTCGATTAAGAGGTCGGATCGGTATCGTCCGAGTCCGGAGTTGCAGCCACTACCGCCTTTGCCTAAGCCGCCGGTGGCTATGTCGCCTCCGGCTTTGTCATCTTCTGATGAGGAAAGTCTGGATACGGCATTTCATACTCCACAATGCTCGTCGATTGTTAGTCATGAGGATGGCTATTTTTCACCGGCTTCTCGTCGGAGTAATTCGGTTAAGAGCTGTTCAGCGGCGAGTTATAAGAATGACCATATGAATTCCAATCCTCCTCCTCCCATTCCGCATTCCAAAAGAACCTCTCCTAAATCGAGATTTTCGGTTTCTTCGACGAAGCGTAAATCGTCTCAGCCTCAGCCACCGCCACCGCCTCCTCCTCCACCGCGTCAGTTTGATGATTTTCGTGATACTCCGAATTCGAAAGAAACAATGCCTTTCTCTGCCACGAGACCTAGATTTTCGAAGCCTCCTCCTCCGCCGAATTTGGCGCTTCTTCAAACAATTAGCAATACAGCTACATTTCCTCAAGTTCCGCAACCTGCTGGAGCTCCACCTCCGCCTCCGCCGCCTCCTCCCCCACCTCCACCTCCACGGCCGTCGGCGCGTCCGGCCTCTTATTCAACACCACAAAAACTAGGGTTGTCAGAAAACAGAATGTCGGCAGTCACTCCTCCAGACTCCTCTAAATCACAATCCTACTCAACAGCGAGATCAAACTCATCTCCGAAATCCACACCGAGTTCTACGGCAACAAATTCTGCTAAAGAAGACGCTGTCCCAAGCACTAATTCTATGGAGAGGCTGGAAGCAGAAGATGCAGATGGTGCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGAGCAACATCAGACCGAGCTACGGTCTGGGATCAACTTAAATCAAGCTCATTCCAATTAAACGAGGATATGATGGAGACACTTTTTGGCTTCAATTCTGCAAATTCTGTTCCCAAAGAAGCCACGAGAAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAACAGAGTATTAGACCCAAAAAAATCGCAGAACATAGCAATACTTCTAAGAGCACTTAATGTCACGCGTGATGAAGTGATCGAAGCTCTTCAAGATGGTAACCCAGAAGGCTTTGGTACTGAGCTCTTAGAAACTCTTGTAAAGATGGCTCCAACCAAAGAGGAAGAGATAAAACTTAGAGAGTACTGTGGTGATGCTTCAAAATTAGGGACTGCCGAAAGATTTCTCAAGTCAGTGCTTGAAGTTCCATTTGCCTTTAGAAGAGTTGAGGCAATGCTGTACAGAGCCAATTTTGATTCAGAAGTAAAGTACCTGAGAAAATCTTTCCAAACCCTTGAGGGTGCAAGTGAAGAATTAAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCAGTTCTAAAGACAGGAAATAGGATGAATGTTGGTACAAATCGCGGTGATGCTAAAGCCTTTAAGCTTGAAACCCTCTTAAAATTAGTAGATATAAAGGGAACAGATGGAAAAACAACATTGCTTCATTTTGTTGTTCAAGAAATCATCAGATCAGAAGGTGGTGCTGATTCAACTAATGACAACCTTCAACCCCGTACCCAAGCTAAAATCGAGGATGAATTCAGAAAGCAGGGCTTGCAAGTTGTGGCTGGACTAAGCAGAGACCTCACCAATGTCAAAAAAGCAGCAGGGATGGACTCAGACGTCTTGAGCAGTTATGTCACAAAGCTCGAAATGGGGCTCGAAAAAGTAAGGTTGGTCTTACAATTCGAAAAGCCAGGAATGCAGGGAAAATTCTTTAACTCAATGAAAACATTCTTGAAAGAGGCAGAAGAGGAAATAGTCAGGATCAAGGCTGATGAAAAACAAGCTTTAACGCTCGTGAAAGCAGTGACGGAGTATTTCCATGGCGATGCAGCTAAGGAAGAAGCCCACCCCTTCCGAATCTTCATGATCGTTCGGGATTTCCTAACCATACTCGATCAAGTATGCAAAGAAGTCGGGAGAATGCAGGACGGAGTAATGGTCGGTGCTGCTCGATCCTTTCGAATATCCGCTACAGCCTCACTCCCAGTCCTCAGCAGGTATAATGTCAGACATGACCGAAGCTCCGACGAGGATAGCTCATCTCCGTGA 2739 46.77 MKLAHPPLSFFFIFFLPLFFTFFTATALTFDSYIPYRRILHQPLFPIGSEPPPEIEFSPPPPPPPDSPADDQPFFHELPTTPDQSQPPPSSSNGTMPIPAATAQPSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGSNNPERFVEDSRAPPSSFFYIGTVEPSQSSVVEQNGANGANSSPYRKLNSIKRSDRYRPSPELQPLPPLPKPPVAMSPPALSSSDEESLDTAFHTPQCSSIVSHEDGYFSPASRRSNSVKSCSAASYKNDHMNSNPPPPIPHSKRTSPKSRFSVSSTKRKSSQPQPPPPPPPPPRQFDDFRDTPNSKETMPFSATRPRFSKPPPPPNLALLQTISNTATFPQVPQPAGAPPPPPPPPPPPPPPRPSARPASYSTPQKLGLSENRMSAVTPPDSSKSQSYSTARSNSSPKSTPSSTATNSAKEDAVPSTNSMERLEAEDADGAKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKEATRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDASKLGTAERFLKSVLEVPFAFRRVEAMLYRANFDSEVKYLRKSFQTLEGASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTNDNLQPRTQAKIEDEFRKQGLQVVAGLSRDLTNVKKAAGMDSDVLSSYVTKLEMGLEKVRLVLQFEKPGMQGKFFNSMKTFLKEAEEEIVRIKADEKQALTLVKAVTEYFHGDAAKEEAHPFRIFMIVRDFLTILDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNVRHDRSSDEDSSSP* 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13503958 13508431 + CsaV3_2G016290.1 Csa02g01413 519470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01413 912 MobiDBLite consensus disorder prediction 183 198 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 87 105 - -
Csa02g01413 912 PANTHER FORMIN-LIKE PROTEIN 6 11 912 - -
Csa02g01413 912 Pfam Formin Homology 2 Domain 470 861 IPR015425 -
Csa02g01413 912 Coils Coil 808 828 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 50 105 - -
Csa02g01413 912 PANTHER FORMIN-RELATED 11 912 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Csa02g01413 912 MobiDBLite consensus disorder prediction 50 70 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 296 311 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 183 475 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 211 227 - -
Csa02g01413 912 ProSiteProfiles Formin homology-2 (FH2) domain profile. 466 887 IPR015425 -
Csa02g01413 912 Gene3D Formin, FH2 domain 460 872 IPR042201 -
Csa02g01413 912 MobiDBLite consensus disorder prediction 142 161 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 400 456 - -
Csa02g01413 912 SUPERFAMILY Formin homology 2 domain (FH2 domain) 383 872 - -
Csa02g01413 912 SMART it6_source 466 876 IPR015425 -
Csa02g01413 912 MobiDBLite consensus disorder prediction 231 283 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 374 399 - -
Csa02g01413 912 MobiDBLite consensus disorder prediction 312 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01413 - - - csv:101208011 1532.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01413 Csa-Chr2:13503958 Csa01g00260 Csa-Chr1:1613373 5.16E-32 dispersed
Csa03g02724 Csa-Chr3:26029083 Csa02g01413 Csa-Chr2:13503958 5.36E-31 dispersed
Csa04g02634 Csa-Chr4:25716565 Csa02g01413 Csa-Chr2:13503958 9.03E-30 dispersed
Csa01g02771 Csa-Chr1:24487800 Csa02g01413 Csa-Chr2:13503958 3.84E-130 transposed
Csa02g02708 Csa-Chr2:23598171 Csa02g01413 Csa-Chr2:13503958 1.43E-128 transposed
Csa03g02281 Csa-Chr3:20297910 Csa02g01413 Csa-Chr2:13503958 8.75E-124 transposed
Csa03g02718 Csa-Chr3:25959151 Csa02g01413 Csa-Chr2:13503958 1.26E-175 transposed
Csa05g00980 Csa-Chr5:8967816 Csa02g01413 Csa-Chr2:13503958 2.91E-171 transposed
Csa05g02377 Csa-Chr5:25983345 Csa02g01413 Csa-Chr2:13503958 1.07E-93 transposed
Csa06g02244 Csa-Chr6:20168345 Csa02g01413 Csa-Chr2:13503958 7.30E-94 transposed
Csa02g01413 Csa-Chr2:13503958 Csa06g03019 Csa-Chr6:26002544 4.33E-16 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g02718 . 182 1057 FH2 protein (formin) Gene Family AT3G25500 51.0 5.5e-188 655.2
Csa05g00980 . 466 942 FH2 protein (formin) Gene Family AT3G25500 65.6 2.1e-163 573.5
Csa02g01413 . 473 892 FH2 protein (formin) Gene Family AT3G25500 63.0 8.5e-141 498.4
Csa01g02771 . 494 886 FH2 protein (formin) Gene Family AT3G25500 51.5 9.2e-103 372.1
Csa03g02718 . 625 1074 FH2 protein (formin) Gene Family AT2G43800 58.9 1.7e-137 487.3
Csa02g01413 . 455 908 FH2 protein (formin) Gene Family AT2G43800 53.7 2.5e-125 446.8
Csa02g02708 . 346 644 FH2 protein (formin) Gene Family AT4G15200 52.3 1.9e-52 203.8
Csa03g02281 . 440 586 FH2 protein (formin) Gene Family AT4G15200 65.5 1.4e-47 187.6
Csa03g02281 . 7 968 FH2 protein (formin) Gene Family AT5G54650 50.4 3.6e-172 602.4
Csa02g02708 . 498 961 FH2 protein (formin) Gene Family AT5G54650 62.7 2.0e-159 560.1
Csa03g02718 . 631 1032 FH2 protein (formin) Gene Family AT5G54650 50.6 1.0e-102 371.7
Csa02g01413 . 36 911 FH2 protein (formin) Gene Family AT5G67470 56.4 1.2e-228 790.0
Csa03g02718 . 612 1064 FH2 protein (formin) Gene Family AT5G67470 59.3 6.0e-135 478.8
Csa05g00980 . 504 924 FH2 protein (formin) Gene Family AT5G67470 62.6 1.2e-127 454.5
Csa01g02771 . 494 888 FH2 protein (formin) Gene Family AT5G67470 52.1 2.9e-105 380.2
Csa05g02377 . 332 817 FH2 protein (formin) Gene Family AT1G59910 51.7 4.4e-125 446.0
Csa03g02718 . 652 1033 FH2 protein (formin) Gene Family AT5G48360 52.1 1.4e-100 364.4
Csa02g01413 . 470 868 FH2 protein (formin) Gene Family AT3G05470 52.0 3.4e-106 383.3
Csa03g02281 . 446 863 FH2 protein (formin) Gene Family AT3G05470 50.8 3.4e-106 383.3
Csa03g02724 . 1 1187 FH2 protein (formin) Gene Family AT1G31810 68.7 0.0e+00 1162.9
Csa01g01729 . 117 257 FH2 protein (formin) Gene Family AT1G31810 66.9 2.7e-45 181.4
Csa01g00260 CCT 1281 1602 FH2 protein (formin) Gene Family AT5G07650 75.2 1.1e-129 461.1
Csa04g02634 . 1008 1330 FH2 protein (formin) Gene Family AT5G07650 63.8 1.0e-109 394.8
Csa01g01880 . 892 1211 FH2 protein (formin) Gene Family AT5G07650 62.0 1.4e-108 391.0
Csa03g02724 . 853 1184 FH2 protein (formin) Gene Family AT5G07650 58.7 1.8e-106 384.0
Csa01g00571 CCT 983 1222 FH2 protein (formin) Gene Family AT5G07650 73.8 8.2e-96 348.6
Csa01g00260 CCT 1208 1595 FH2 protein (formin) Gene Family AT5G07770 69.4 1.1e-140 497.3
Csa04g02634 . 933 1322 FH2 protein (formin) Gene Family AT5G07770 58.6 2.0e-118 423.3
Csa01g01880 . 815 1203 FH2 protein (formin) Gene Family AT5G07770 56.7 2.0e-115 413.3
Csa03g02724 . 789 1178 FH2 protein (formin) Gene Family AT5G07770 55.0 2.9e-114 409.5
Csa01g00571 CCT 896 1222 FH2 protein (formin) Gene Family AT5G07770 63.7 7.7e-107 384.8
Csa04g02634 . 925 1333 FH2 protein (formin) Gene Family AT3G32400 75.3 7.8e-169 590.5
Csa01g01880 . 786 1212 FH2 protein (formin) Gene Family AT3G32400 65.0 7.6e-148 520.8
Csa01g00260 CCT 1208 1602 FH2 protein (formin) Gene Family AT3G32400 65.5 1.4e-141 500.0
Csa03g02724 . 789 1183 FH2 protein (formin) Gene Family AT3G32400 66.2 4.0e-141 498.4
Csa01g00571 CCT 876 1218 FH2 protein (formin) Gene Family AT3G32400 57.6 4.7e-105 378.6
Csa01g01729 . 81 257 FH2 protein (formin) Gene Family AT3G32400 57.0 1.7e-46 184.1
Csa04g02634 . 1 1333 FH2 protein (formin) Gene Family AT2G25050 55.2 0.0e+00 1181.0
Csa01g01730 . 1 438 FH2 protein (formin) Gene Family AT2G25050 61.3 1.1e-152 538.1
Csa01g01729 . 82 257 FH2 protein (formin) Gene Family AT2G25050 59.8 2.0e-50 198.4
Csa01g00260 CCT 1209 1602 FH2 protein (formin) Gene Family AT5G07780 63.0 3.6e-123 438.7
Csa04g02634 . 934 1323 FH2 protein (formin) Gene Family AT5G07780 54.4 4.4e-105 378.6
Csa03g02724 . 790 1179 FH2 protein (formin) Gene Family AT5G07780 52.2 3.8e-101 365.5
Csa01g01880 . 822 1203 FH2 protein (formin) Gene Family AT5G07780 53.3 4.2e-100 362.1
Csa01g00571 CCT 907 1222 FH2 protein (formin) Gene Family AT5G07780 57.8 4.1e-95 345.5
Csa01g00260 CCT 1 1611 FH2 protein (formin) Gene Family AT5G07740 62.1 0.0e+00 1121.3
Csa01g01730 . 1 402 FH2 protein (formin) Gene Family AT5G07740 57.0 5.8e-128 456.4
Csa01g01729 . 99 257 FH2 protein (formin) Gene Family AT5G07740 59.4 8.0e-45 180.3
Csa01g00260 CCT 1280 1609 FH2 protein (formin) Gene Family AT5G07760 74.7 3.1e-128 456.4
Csa01g01880 . 891 1211 FH2 protein (formin) Gene Family AT5G07760 64.4 8.4e-110 395.2
Csa04g02634 . 1007 1330 FH2 protein (formin) Gene Family AT5G07760 65.2 8.4e-110 395.2
Csa03g02724 . 863 1184 FH2 protein (formin) Gene Family AT5G07760 60.4 6.2e-105 379.0
Csa01g00571 CCT 982 1222 FH2 protein (formin) Gene Family AT5G07760 73.9 9.0e-96 348.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007546 2 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01413 Csa_Chr02 FPKM 36.295357 32.198158 66.748238 68.745239 18.048124 8.264444 17.963583 70.448257 67.680946 82.534416