Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01422 ATGAAAGACAGAAAGGAAGAGAAAAAATCAAAGCAATTCAAGGGGATAAGGATGAGAAAATGGGGGAAATGGGTTGCCGAAATTCGAGAACCCAATAAACGCTCTCGAATTTGGCTGGGTTCTTATTCCTCCCCCGTCGCTGCCGCCCGTGCTTACGACGCCGCCGTCTTCCACCTCCGTGGCCCCACCGCTCGCCTTAATTTCCCTGACTTTTTAACAACCACCGTTGACCGTGCTTCCTCCTTCCCTCTCTCCGCCGCTGCTGTCCGCAAGATCGCTGCCGAAGTCGGCGCTCAGGTCGACGCCCTTGAGTCGTCTCGCCGTCATTCTTCCGACCAAAGTTGTTCTCTCAACCCCACCAAGCTTCGTTGCTGTTCTTATTCTTGTTCAAGTGGTTTTTCCGATCGGGTCGACTTGAATAAATTTCCTGACCCGGAAGATTCCGATGGCGACTGCGTTAGTACTCATTGGACAAGCTGA 480 52.29 MKDRKEEKKSKQFKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDAAVFHLRGPTARLNFPDFLTTTVDRASSFPLSAAAVRKIAAEVGAQVDALESSRRHSSDQSCSLNPTKLRCCSYSCSSGFSDRVDLNKFPDPEDSDGDCVSTHWTS* 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13655334 13656587 + CsaV3_2G016380.1 Csa02g01422 519479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01422 159 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Csa02g01422 159 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Csa02g01422 159 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 3 149 - -
Csa02g01422 159 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Csa02g01422 159 PRINTS Ethylene responsive element binding protein signature 51 71 IPR001471 GO:0003700|GO:0006355
Csa02g01422 159 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 3 149 - -
Csa02g01422 159 Gene3D AP2/ERF domain 11 70 IPR036955 GO:0003700|GO:0006355
Csa02g01422 159 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700|GO:0006355
Csa02g01422 159 SMART rav1_2 12 75 IPR001471 GO:0003700|GO:0006355
Csa02g01422 159 Pfam AP2 domain 12 61 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01422 Csa06g02954 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01422 Csa-Chr2:13655334 Csa04g02438 Csa-Chr4:24520725 4.12E-52 dispersed
Csa02g01422 Csa-Chr2:13655334 Csa06g02954 Csa-Chr6:25584512 1.89E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30932 PF00847 AP2 3.20E-11 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01422 K09286 - csv:101209150 315.079