Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01423 ATGTGGGATCTCAATGATTCTCCTGATCATGGCGGAACTGATGAATTTGAGGTTCTTTCATCGATTGATGGCGATGACGATAGAGGGAAATGGATAGGGTCCATTAATTCTAACTCGAGCTCTTCTGTGGTGGTTATGGAGGATGGATCCGACGCCGATGAGGCTAGCGTCGGCGAGGGAGAACCACTACTTCGCCGGAATAACTTCTCCGTAACTCACCCACCGGCGACTCGGCAGTTCTTTCCCATGGAGGATTCTGACGTGGAGGCTTCATCGGCCGCCGTCGGTGGTTCAACTACGTTTCCTCCAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAGACAGAGCCTATCGCTGCTGTGAGACCAGTGGCGGTTCTGCAGCCAATAAAGAAAAGCCGCCGAGGGCCTAGGTCTCGGAGCTCTCAATATCGCGGCGTAACGTTCTACCGGCGCACCGGCCGATGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGTGGATTTGATACTGCTCATGCAGCTGCTCGAGCCTACGACAGAGCAGCTATAAAGTTTCGAGGAACAGAGGCAGACATAAATTTCAGCATTGAAGATTACGAGGATGATTTGCAGCAGATGGGAAATTTAACGAAGGAAGAGTTTGTGCATGTTCTTCGTAGACAAAGCACGGGATATCCCAGAGGTAGCTCGAAATTTAGAGGTGTTACATTGCATAAATGTGGAAGATGGGAGGCTCGAATGGGGCAGTTTTTAGGCAAAAAGTATGTTTATTTGGGGTTGTTCGATTCTGAGATCGAAGCTGCAAGAGCTTATGATAAAGCTGCAATAAAGTGTAATGGGAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCACCATCAACCAAAGTCTTGGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAAACACACCCTTTCATTTGGGAATCATTGCACAAATGTCACCCCAAATATTGATTTGCAAATTTCTAATGAATCTAACCCTCAGGAATCAAACATATTTGAGAATGATAATGTTATATGCCATACGCTCCTTCAGACGGAGAAAATGCAGTTTCGTAGCGAAATGATTGTTCGATCTCCACCCTCAGTCGAAACAACAAAACATGGGTGCTTGGAGACTCTTCACAATTACTCCCCACACATCAATCAATCGAACTCTCAAATTCATTTGTTGAGAAGCAGCAATGAAGAAGGGTTAGGAGGGAGTGATGAAGTTTCACTGAGTTTGAGTGAAGGCCATCAATGGCAGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAATTTTCAACGCCCAAAAATTGGCTGCAGAAGAATAATGGTTGCTTCTTCTTACAGAGACCCTCTTGA 1452 45.87 MWDLNDSPDHGGTDEFEVLSSIDGDDDRGKWIGSINSNSSSSVVVMEDGSDADEASVGEGEPLLRRNNFSVTHPPATRQFFPMEDSDVEASSAAVGGSTTFPPARWVGVKFCQTEPIAAVRPVAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGTEADINFSIEDYEDDLQQMGNLTKEEFVHVLRRQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESPSTKVLEQNLDLRLGNSSSKKHTLSFGNHCTNVTPNIDLQISNESNPQESNIFENDNVICHTLLQTEKMQFRSEMIVRSPPSVETTKHGCLETLHNYSPHINQSNSQIHLLRSSNEEGLGGSDEVSLSLSEGHQWQQQSGGSQQFANAAASSGFPQLQFSTPKNWLQKNNGCFFLQRPS* 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13663874 13668119 + CsaV3_2G016390.1 Csa02g01423 519480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01423 483 Gene3D AP2/ERF domain 233 292 IPR036955 GO:0003700|GO:0006355
Csa02g01423 483 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700|GO:0006355
Csa02g01423 483 MobiDBLite consensus disorder prediction 42 69 - -
Csa02g01423 483 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700|GO:0006355
Csa02g01423 483 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700|GO:0006355
Csa02g01423 483 MobiDBLite consensus disorder prediction 419 451 - -
Csa02g01423 483 SMART rav1_2 234 297 IPR001471 GO:0003700|GO:0006355
Csa02g01423 483 SMART rav1_2 142 204 IPR001471 GO:0003700|GO:0006355
Csa02g01423 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 460 - -
Csa02g01423 483 MobiDBLite consensus disorder prediction 1 23 - -
Csa02g01423 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 1 460 - -
Csa02g01423 483 ProSiteProfiles AP2/ERF domain profile. 234 291 IPR001471 GO:0003700|GO:0006355
Csa02g01423 483 MobiDBLite consensus disorder prediction 431 451 - -
Csa02g01423 483 Pfam AP2 domain 233 282 IPR001471 GO:0003700|GO:0006355
Csa02g01423 483 Pfam AP2 domain 142 190 IPR001471 GO:0003700|GO:0006355
Csa02g01423 483 SUPERFAMILY DNA-binding domain 233 293 IPR016177 GO:0003677
Csa02g01423 483 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700|GO:0006355
Csa02g01423 483 CDD AP2 233 293 IPR001471 GO:0003700|GO:0006355
Csa02g01423 483 CDD AP2 142 197 IPR001471 GO:0003700|GO:0006355
Csa02g01423 483 SUPERFAMILY DNA-binding domain 141 199 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01423 Csa06g02953 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01423 Csa-Chr2:13663874 Csa06g01688 Csa-Chr6:14811535 4.62E-105 dispersed
Csa02g01423 Csa-Chr2:13663874 Csa06g02953 Csa-Chr6:25565842 6.32E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30933 PF00847 AP2 2.00E-09 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01423 K09284 - csv:101208665 913.679