Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01427 ATGGAAGCTAATATTTATGATCTTAAGGTGCCTCTAAATTCAAGGGACCTCGATTATAACTTGGAGAAGGATCGTGCAAATTTGTTTTTCTACGGAGAAGTATGGAGAGGAAGAGTGAGATCAAATGTAGAGGAACACAGAACAATAGATACCATAGAAGCCGGAGGATTCCTCACTGACGAATTTTTCAACCAAGCCATTACATCAACGTGTCGTCTAAGAATCTCGCAAATCACCTATCCAGCAAAACTCCGATCTCTTCAAAAAGGCCTAGCCATGGTGCACGGCGTAAAACGAGCAACCGTACATCTCGAATTCAAAGAAGCCAAAGTCTTGTTTGATCCAAATTTAACCACAGAAACCCTAATCCTCAAAGCAATCGCGGATATCGGCTTTGAAGCAGATCTCATCTCCGTGGGAGACGAAGCCTACGAAGTTCATTTAAAACTCGACCGAGCTAGCTCTGGAGACATGGGCGCCATAAAGTCCTCTCTGGAGCAAGCTGTCGGAGTAACTTATGTTGAAATGGAAGTGGTAGAGCGGATGGTGACGGTGGGGTATGAACCTGATCGGACGGGTCCAAGATCGATCTTGCAATTCTTGGAGAAGTATGGAGCAAGGTTGTACGTGCCTCCAAAGAGAAGAGAATTGGAGCAGCATCAAGAAGCTTGTGCTTATAGGAATTTGTTCTTGTTTAGCTGCTTGTTTTCTGTTCCGGTGGTGGCTTTCGCAATGGTGCTTCCAATGCTTCCTCCATACGGAGATTGGTTGAATTTTAGGGTTTGCAAGATGCTCACTATTGGGATGGTTCTTAAATGGATCTTCTGCACTCCAGTCCAGTTCCTTGCTGGTGGCAGATTTTATGTAGGATCGTACCGTGCATTACAACGGAAATCTGCAAATATGGATGTTTTGGTTGCTGTAGGCACCAATGCAGCTTACTTTTACTCGGTATACATAGTATTTAAAGCATCCACTTCCAACTCTTTTAGGGGGAAGGATTTCTTTGAGACTAGCTCCATGTTGATCTCCTTCATTCTACTTGGAAAATATTTAGAGGTCATGGCCAAAGGCAAATCATCAGATGCTTTAGGAAAGCTTGCTCATCTTGCTCCGGACACGGCTTGTTTGATGAACTTTGATGATAATGGAAGTTTGCTATCTGAGGTGGAGATTGATACCCAACTGATACAGAGAAATGACATAATTAAGATTGTTCCAGGGGCAAAAGTTCCTGTTGATGGGATTGTTATTGGTGGTGAAAGTAATGTGAATGAGAGTACAATTACAGGAGAAGCAAGATCCATTTGCAAATCAACTGGTGATAAGGTTATTGGAGGAACTGTCAATGAGAATGGAATCTTATTTGTTAAGACCACTCATGTTGGAACTGATACTACACTTTCTCGAATTGTACAACTCGTGGAATCAGCGCAGCTATCACGAGCACCGGCTCAAAAATTAGCAGATCAGATATCAAAGTTCTTTGTTCCTGTTGTTGTTGTGGCAGCATTTGTGACATGGCTTGGATGGTTAATTTGTGGAGAAATTGGTTTATACCCCAAACATTGGATACCAAAAGGCATGGATGAGTTTGAACTTGCACTGCAGTTTAGCATTTCAGTGCTGGTGATTGCATGCCCTTGTGCCCTTGGCTTAGCAACGCCAACTGCGATCATGGTTGCATCAGGAAAGGGTGCTTCTTTAGGCGTGCTCATTAAAGGGGCAAGTGCACTTCAAAATGCATACAAGGTGAAAACGGTAGTTTTTGACAAGACTGGAACTCTAACAGTTGGAAGGCCAGAGGTAGTTAGTGTTGTGCTTTTTTCTACATTTCCAATGCAGGAGGTTTGTGATGCAGCAATAGCAATTGAGTCAAACAGCGATCACCCTTTTGCAAAACCTGTAGTGGAGCATGCAAAGAAAATGAGAAGGAAGTTCGGGGCCCGAAGCGAATGTTGCAAACGCGTCCAGAACTTTGAGGTGTTCCCGGGAGGAGGGGTTGGAGGAAAAATTGATAGAAAGACAGTTTTAGTAGGAAACAAAAGGCTAATGCGAGTTCACAACGTTGATATTACTCCTCAAGTTGATCGGTATACCATAGAAAACGAGCGGCTGGCTCAAACATGTGTCTTGGTAGCTATTAATGGCAAGATAGCTGGAGGTTTTGGCGTTTTGGATACACCAAAGCCGGGTACTAAAGCTATCATATCATTTCTTCGCTCCATTGGCATCTCAACCATAATGATCACTGGAGATAACTTGGCCACAGCCTTTGCGGTTGCAAGAGGAGTTGGGATTAATAAAGTCTTTGCAGAGATGGATCCAATTGAAAAGGCTAACCAGATTAAATCCTTAAAGACGAGAGGCAATATTGTGGCAATGGTGGGAGATGGAGTAAACGACTCACATGCCTTAGCTGCAGCTGATGTTGGTATTGCAATTGGTGCTGGAACCAATATTGCTATAGAAGCAGCTGATATTGTTCTAATGCGAAGCAATTTAGAAGATGTGGTTACTGCCATAGATCTCTCAAGACAAACGGTTTATCGTATATGGCTTAACTACATCTGGGCTCTTGGCTATAATATCATCGGCATGCCTATCGCTGCCGGAATCCTATATCCCTTCTTTGGAATCCGATTGCCACCGTGGCTTGCTGGTGCCTGCATGGCTGCTTCCTCTCTTAGTGTTGTATGTTCTTCTCTCTTGTTGAAATGTTATAGGAGACCCTTGAATTTTCAATCCACTTAA 2754 43.25 MEANIYDLKVPLNSRDLDYNLEKDRANLFFYGEVWRGRVRSNVEEHRTIDTIEAGGFLTDEFFNQAITSTCRLRISQITYPAKLRSLQKGLAMVHGVKRATVHLEFKEAKVLFDPNLTTETLILKAIADIGFEADLISVGDEAYEVHLKLDRASSGDMGAIKSSLEQAVGVTYVEMEVVERMVTVGYEPDRTGPRSILQFLEKYGARLYVPPKRRELEQHQEACAYRNLFLFSCLFSVPVVAFAMVLPMLPPYGDWLNFRVCKMLTIGMVLKWIFCTPVQFLAGGRFYVGSYRALQRKSANMDVLVAVGTNAAYFYSVYIVFKASTSNSFRGKDFFETSSMLISFILLGKYLEVMAKGKSSDALGKLAHLAPDTACLMNFDDNGSLLSEVEIDTQLIQRNDIIKIVPGAKVPVDGIVIGGESNVNESTITGEARSICKSTGDKVIGGTVNENGILFVKTTHVGTDTTLSRIVQLVESAQLSRAPAQKLADQISKFFVPVVVVAAFVTWLGWLICGEIGLYPKHWIPKGMDEFELALQFSISVLVIACPCALGLATPTAIMVASGKGASLGVLIKGASALQNAYKVKTVVFDKTGTLTVGRPEVVSVVLFSTFPMQEVCDAAIAIESNSDHPFAKPVVEHAKKMRRKFGARSECCKRVQNFEVFPGGGVGGKIDRKTVLVGNKRLMRVHNVDITPQVDRYTIENERLAQTCVLVAINGKIAGGFGVLDTPKPGTKAIISFLRSIGISTIMITGDNLATAFAVARGVGINKVFAEMDPIEKANQIKSLKTRGNIVAMVGDGVNDSHALAAADVGIAIGAGTNIAIEAADIVLMRSNLEDVVTAIDLSRQTVYRIWLNYIWALGYNIIGMPIAAGILYPFFGIRLPPWLAGACMAASSLSVVCSSLLLKCYRRPLNFQST* 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13698624 13712497 + CsaV3_2G016430.1 Csa02g01427 519484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01427 917 Gene3D - 68 140 - -
Csa02g01427 917 SFLD Haloacid Dehalogenase 571 848 - -
Csa02g01427 917 Gene3D - 357 479 - -
Csa02g01427 917 PRINTS Copper-transporting ATPase 1 signature 96 119 - -
Csa02g01427 917 PRINTS Copper-transporting ATPase 1 signature 125 145 - -
Csa02g01427 917 PRINTS Copper-transporting ATPase 1 signature 167 188 - -
Csa02g01427 917 PRINTS Copper-transporting ATPase 1 signature 230 251 - -
Csa02g01427 917 PRINTS Copper-transporting ATPase 1 signature 265 285 - -
Csa02g01427 917 PRINTS Copper-transporting ATPase 1 signature 285 310 - -
Csa02g01427 917 Pfam E1-E2 ATPase 388 567 - -
Csa02g01427 917 Pfam haloacid dehalogenase-like hydrolase 585 810 - -
Csa02g01427 917 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 4 916 - -
Csa02g01427 917 Gene3D - 596 674 IPR023299 GO:0000166
Csa02g01427 917 Gene3D - 675 727 IPR023299 GO:0000166
Csa02g01427 917 CDD P-type_ATPase_Cu-like 230 892 - -
Csa02g01427 917 Gene3D - 556 852 IPR023214 -
Csa02g01427 917 CDD HMA 85 134 IPR006121 GO:0046872
Csa02g01427 917 SUPERFAMILY Calcium ATPase, transmembrane domain M 338 857 IPR023298 -
Csa02g01427 917 ProSitePatterns E1-E2 ATPases phosphorylation site. 591 597 IPR018303 -
Csa02g01427 917 SUPERFAMILY HAD-like 587 902 IPR036412 -
Csa02g01427 917 SUPERFAMILY Calcium ATPase, transduction domain A 389 475 IPR008250 -
Csa02g01427 917 PANTHER COPPER-TRANSPORTING ATPASE HMA4 4 916 - -
Csa02g01427 917 SUPERFAMILY HMA, heavy metal-associated domain 69 140 IPR036163 GO:0046872
Csa02g01427 917 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 342 873 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa02g01427 917 SFLD p-type atpase 571 848 IPR044492 -
Csa02g01427 917 SUPERFAMILY HMA, heavy metal-associated domain 154 210 IPR036163 GO:0046872
Csa02g01427 917 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Csa02g01427 917 PRINTS P-type cation-transporting ATPase superfamily signature 589 603 - -
Csa02g01427 917 PRINTS P-type cation-transporting ATPase superfamily signature 721 732 - -
Csa02g01427 917 PRINTS P-type cation-transporting ATPase superfamily signature 743 753 - -
Csa02g01427 917 PRINTS P-type cation-transporting ATPase superfamily signature 796 815 - -
Csa02g01427 917 PRINTS P-type cation-transporting ATPase superfamily signature 819 831 - -
Csa02g01427 917 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 302 905 IPR027256 GO:0006812|GO:0016021|GO:0019829
Csa02g01427 917 ProSiteProfiles Heavy-metal-associated domain profile. 70 136 IPR006121 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02172 Csa-Chr1:18849770 Csa02g01427 Csa-Chr2:13698624 4.82E-67 dispersed
Csa02g01427 Csa-Chr2:13698624 Csa05g00291 Csa-Chr5:1823864 0 dispersed
Csa02g01427 Csa-Chr2:13698624 Csa02g00655 Csa-Chr2:4969020 8.40E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01427 K17686 - csv:101214276 1689.09