Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g01433 | ATGGAGTGGATTCGAGGGGATCAACTCGGCCGTGGCAATTTTGCTACAATCAATTTAGCAAAGTTAACTAAAGGGTTCGATCAGTTCCCGCCATTAATGGCGGTCAAATCCTCTGTTTCTTCTCTATCCTCTGTTTCATCACTCAAGAACGAGAAGCAAATTCTTGATCGAATTGGGGTTTGCCCACAGATTATCACTTGTTATGGCGATGGATTCAGTGTTGAAAAAGATGGGGATAAGTGTTATAATTTGTTCTTGGAGTATGCTAATGGCGGAAGTCTTGCGGATGCTTTGAGAATCCATGGCGGTGGGTTGTCGGAATTTGACGTTCGAAGGTATACGAGAGCCATTCTTTGTGGACTACAGCATGTTCATGGCAATGGGTTTGTTCATTGCGACTTAAAGCTTTCGAATGTGTTGATTTTCGGGAATGGTGAAGTTAAGATCGCGGATTTTGGGCTTGCTAAATCGGCTGGAAAATTTGCGGCAGTGGAAACAGAGGAGAGATTTGAGTGGAGAGGGACTCCGATGTATATGTCGCCGGAGATTGTAAACGACGGTGAGTATGAGTCGCCGTGTGATATTTGGGCGTTGGGTTGCGCCGTCGTCGAGATGGTGGTTGGAAAGCCGGCGTGGAGGGTTGGACCGGAAACGGATATGTTTGGCTTGATGATGAGGATTGGAGTCGGAGATGAAGTACCGGAGGTACCAGAGAATTTATCGGCGGAGGGGAAAGATTTTATCCGGCGGTGTTTTGTAAAGGATCCAAGTAAGAGATGGACGGCGGAGATACTTTTGAATCACCCATTCGTCGCCGGTGCCGGTGACACTGTTACATTGAAGGAAGTAGAATTGGCGACGGAATCACCAACGGGGCCTTTCGATTTCCCGGAATTCGTTTGTTCCGGGCAAGGTTCGGATGAGTGGAGTTTTTGTTCTTCCAGTTCGTCGCCAGAGGTGTTGAGTAGGGTCCGGCAGCTGATGACGGGGAAGCCTTTGGATTGGTCTGTCATGGATAGTTGGGTGACAGTTAGGTGA | 1038 | 47.98 | MEWIRGDQLGRGNFATINLAKLTKGFDQFPPLMAVKSSVSSLSSVSSLKNEKQILDRIGVCPQIITCYGDGFSVEKDGDKCYNLFLEYANGGSLADALRIHGGGLSEFDVRRYTRAILCGLQHVHGNGFVHCDLKLSNVLIFGNGEVKIADFGLAKSAGKFAAVETEERFEWRGTPMYMSPEIVNDGEYESPCDIWALGCAVVEMVVGKPAWRVGPETDMFGLMMRIGVGDEVPEVPENLSAEGKDFIRRCFVKDPSKRWTAEILLNHPFVAGAGDTVTLKEVELATESPTGPFDFPEFVCSGQGSDEWSFCSSSSSPEVLSRVRQLMTGKPLDWSVMDSWVTVR* | 346 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 13763727 | 13765147 | + | CsaV3_2G016490.1 | Csa02g01433 | 519490 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g01433 | 345 | Pfam | Protein kinase domain | 6 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa02g01433 | 345 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 129 | 141 | IPR008271 | GO:0004672|GO:0006468 | |
Csa02g01433 | 345 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 297 | IPR011009 | - | |
Csa02g01433 | 345 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 1 | 323 | - | - | |
Csa02g01433 | 345 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 | 1 | 323 | - | - | |
Csa02g01433 | 345 | CDD | STKc_MAPKKK | 2 | 271 | - | - | |
Csa02g01433 | 345 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 291 | - | - | |
Csa02g01433 | 345 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 36 | IPR017441 | GO:0005524 | |
Csa02g01433 | 345 | ProSiteProfiles | Protein kinase domain profile. | 3 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa02g01433 | 345 | SMART | serkin_6 | 3 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa02g01433 | Csa06g02946 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01433 | Csa-Chr2:13763727 | Csa07g02080 | Csa-Chr7:20072715 | 1.44E-65 | dispersed | |
Csa02g01433 | Csa-Chr2:13763727 | Csa06g02946 | Csa-Chr6:25516201 | 6.25E-136 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77897 | PF00069 | Pkinase | 1.10E-51 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g01433 | - | - | csv:101214756 | 677.167 |