Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01433 ATGGAGTGGATTCGAGGGGATCAACTCGGCCGTGGCAATTTTGCTACAATCAATTTAGCAAAGTTAACTAAAGGGTTCGATCAGTTCCCGCCATTAATGGCGGTCAAATCCTCTGTTTCTTCTCTATCCTCTGTTTCATCACTCAAGAACGAGAAGCAAATTCTTGATCGAATTGGGGTTTGCCCACAGATTATCACTTGTTATGGCGATGGATTCAGTGTTGAAAAAGATGGGGATAAGTGTTATAATTTGTTCTTGGAGTATGCTAATGGCGGAAGTCTTGCGGATGCTTTGAGAATCCATGGCGGTGGGTTGTCGGAATTTGACGTTCGAAGGTATACGAGAGCCATTCTTTGTGGACTACAGCATGTTCATGGCAATGGGTTTGTTCATTGCGACTTAAAGCTTTCGAATGTGTTGATTTTCGGGAATGGTGAAGTTAAGATCGCGGATTTTGGGCTTGCTAAATCGGCTGGAAAATTTGCGGCAGTGGAAACAGAGGAGAGATTTGAGTGGAGAGGGACTCCGATGTATATGTCGCCGGAGATTGTAAACGACGGTGAGTATGAGTCGCCGTGTGATATTTGGGCGTTGGGTTGCGCCGTCGTCGAGATGGTGGTTGGAAAGCCGGCGTGGAGGGTTGGACCGGAAACGGATATGTTTGGCTTGATGATGAGGATTGGAGTCGGAGATGAAGTACCGGAGGTACCAGAGAATTTATCGGCGGAGGGGAAAGATTTTATCCGGCGGTGTTTTGTAAAGGATCCAAGTAAGAGATGGACGGCGGAGATACTTTTGAATCACCCATTCGTCGCCGGTGCCGGTGACACTGTTACATTGAAGGAAGTAGAATTGGCGACGGAATCACCAACGGGGCCTTTCGATTTCCCGGAATTCGTTTGTTCCGGGCAAGGTTCGGATGAGTGGAGTTTTTGTTCTTCCAGTTCGTCGCCAGAGGTGTTGAGTAGGGTCCGGCAGCTGATGACGGGGAAGCCTTTGGATTGGTCTGTCATGGATAGTTGGGTGACAGTTAGGTGA 1038 47.98 MEWIRGDQLGRGNFATINLAKLTKGFDQFPPLMAVKSSVSSLSSVSSLKNEKQILDRIGVCPQIITCYGDGFSVEKDGDKCYNLFLEYANGGSLADALRIHGGGLSEFDVRRYTRAILCGLQHVHGNGFVHCDLKLSNVLIFGNGEVKIADFGLAKSAGKFAAVETEERFEWRGTPMYMSPEIVNDGEYESPCDIWALGCAVVEMVVGKPAWRVGPETDMFGLMMRIGVGDEVPEVPENLSAEGKDFIRRCFVKDPSKRWTAEILLNHPFVAGAGDTVTLKEVELATESPTGPFDFPEFVCSGQGSDEWSFCSSSSSPEVLSRVRQLMTGKPLDWSVMDSWVTVR* 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13763727 13765147 + CsaV3_2G016490.1 Csa02g01433 519490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01433 345 Pfam Protein kinase domain 6 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01433 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Csa02g01433 345 SUPERFAMILY Protein kinase-like (PK-like) 3 297 IPR011009 -
Csa02g01433 345 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 323 - -
Csa02g01433 345 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 323 - -
Csa02g01433 345 CDD STKc_MAPKKK 2 271 - -
Csa02g01433 345 Gene3D Transferase(Phosphotransferase) domain 1 2 291 - -
Csa02g01433 345 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Csa02g01433 345 ProSiteProfiles Protein kinase domain profile. 3 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa02g01433 345 SMART serkin_6 3 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01433 Csa06g02946 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01433 Csa-Chr2:13763727 Csa07g02080 Csa-Chr7:20072715 1.44E-65 dispersed
Csa02g01433 Csa-Chr2:13763727 Csa06g02946 Csa-Chr6:25516201 6.25E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77897 PF00069 Pkinase 1.10E-51 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01433 - - csv:101214756 677.167