Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01434 ATGGCGGACGAACAGCCCTCAGCTTCTAATCGTCGGAGGAGCAGAGGATCTGAGGCTGCCGCCCGACTTACCGCTCTCGAACGTCTCAAAGCCATCCGCAGCGGTGGCCGTCGATCGGAAGCCGGTGGTTTCCAAGTGAAGTTGGAAAATCCTATCTACGATACGATTCCAGAGGATGAGTATGATGCTCTCGTTGCAAAGCGACGCGAGGAAGTCCGAGGGTTTATTGTTGATGACGACGGTCTTGGATATGGAGATGAAGGTGAGGAAGAGGATTGGTCGAAAGCTGGGGTTTGTTTTTCAGATGAGTCTGATGGTGAGCTGGACAAACCTAAGAAGAGGAAAGTGGTGAAGAAAGAGACGCAACCGAAGAAGCCCTCTTCTTCTTCTTTAACGGCGGCGGCAGCGATGATGGGGAAACAAAAGCTTTCTTCGATGTTTACTTCATCCATCTTCAGGAAAACGGGTAGAGACGATAAGGCTAAAGGATTGGGTTGTGATAGTATTGTGGATGATGTGATTGCTGAATTTGCTCCAGATGAGACTGATAGGGAGAGGCGTAGAAAGGGGCAAATTGGAGCTATACCGATTTTGAGGACTGTTACGTCTGTTCCTGCCGTGAAGTCCGAGGGATTCACTGCTCGGGGTCTTAATTTGACTGGTGAGTCTGACTTCATCAAGGATGCTGAAAATGGGAACTCGGAAACGACCAGGGTTGTTACAAACAGTGATTTGGAGTCTGTACGAGGTGGTGTGGAGGTCCAGGGAAATGGTGAAACTAAGGAATTTGATTCAAAGGACTTGAATTCTCAAATCAACTTGGATCCGGTTGAGCAATTACCTAATTCTTTGATCAAGGAAGATGTAAGTGGAGACACTATGCCAATTAAAGTTGAAACAAAGGCAGAACCGTTGGTGAAGAAGGAACCAGTGAGTACTTTGAATGCTAAGATTAGCAATGAAAGAGACCCAGCTTTGAGTGCTACTGCGGAATGGCAGGCAGTAAGGAGTGAAGGGAGTGGAAGTGTTAATTCTGCAGCAGAGATGGCTGAAGAGAAATCCGAATTTGATACCGACACTGACGGCTCTCTTCCTTTCTATATCGTTGATGCACATGAGGAGCTCTTCGGTGCAAATATGGGCACTGTATATCTATTTGGGAAGGTCAAAGCTGGGGATACGTTCCACAGTTGTTGTGTGGTGGTGAAAAATATGCAAAGATGCATATATGCCATTCCAAGTGCTTCTTTTCTCCATTCGGATGAGATGTTGGAGCTCCAGAAGGATGCTGAAGAGTCTCAGCTTTCTCCTGCAGACCTGCGTGCCAAATTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATGGCTAAGCAGTTGCTAGACCTCAATGTTTCAACATTTAGCATGACACCGGTTAAGAGGAAATATGCATTTGAGCGTCAAGACATACCTGCAGGGGAGAATTATGTGATTAAGATTAATTACCCATTCAAGCACCCCCCACTTCCCGCTGATCTAAAAGGAGAATTGTTCTGTGCTCTTTTAGGAACACATCGCAGTGCCTTAGAGCTTCTCCTCATTAAAAGGAAAATTAAGGGCCCCTCCTGGTTGTCAATTTCAAAATTTTCTTCTCGTCCTGCTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTTGACTCTCCAAAAGATGTGCAAACTTCAACGTCATCAAGCAAAAATTTGGAGATTCCTCCTATGATTGTCACTGCAATAAACATAAAGACCATCATTAATGAAAGGCAGAGTGTCAACGAAATTGTGTCTGCATCTGTCATATGCTGTCAAAGAGCAAAGATTGACGGTCCCATGTTGGCCACAGAATGGAAGAAGCCTGGTATGCTAAGGCATTTTACTGTCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAGTCCACTGATAGAAATTCGAAGGCTGGATCAAATGTTCTGATCTGCGAGGGCAATGAAAGGGCCTTGTTGAATAGGTTAATGATCGAATTATTCAAATTGGATAGTGATGTGCTGGTTGGACACAATATCTCTGGGTTTGATTTAGATGTTCTTCTCCATCGAGCACAGTTTTGCCGAGTACCAAGCAGCATGTGGTCCAAAATAGGCCGCCTTAAGCGGTCTGTAATGCCAAAACTTGGAAAGGGAGGGAACATTTTTGGGTCTGGAGCAAGTCCAGGACTCATGTCTTGCATTGCTGGTCGACTCTTATGTGATACGTACTTGTCTTCCCGTGACCTATTGAAGGAGATAAGTTATTCTTTGACAGAGCTAGCAAAAACTCAACTTAATAAGGACCGCAAGGAAGTCACTTCACATGAAATTCCAAAAATGTACCAGGCATCCGAGTCTCTCATGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCCCTTACTCGACAGTTAACTAATATCAGTGGTAACCTCTGGGGAAGAAGTCTACAGGGTGCTAGAGCCCAGAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCAAAAAATATATTGTCCCCGACAAGAATTCATCTTATGTGAAAGATAAAAAGATTGTAAAAAAGAGAACAAATCATGGATCTGAGGAAAAAAATGTTGATCAATTTGATTTGGATGATGGAAATGTAGAAGCTCCCAATACTGACAGTGGAAAGGGCAAAAAGGGACCCTCCTATTTAGGTGGGCTAGTCTTGGAGCCAAAGCGAGGTTTATATGATAAGTATGTATTGCTCCTGGACTTTAACAGTCTGTACCCTTCTATCATTCAGGAATATAATATTTGCTTTACCACTGTTGAAAGATCCCCAGATGGTGTTATTCCTCCTCTGCCATCTAGTAGAGTGACGGGAGTTCTTCCTGAGTTGCTTAAAAATCTGGTTCAGAGAAGAAGAATGGTGAAGTCATGGATGAAGAATGCCTCTGGTCTCAAGCTTCAGCAACTTGACATTCAGCAGCAGGCACTAAAGCTCACTGCAAACAGTATGTATGGATGTCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTAGCAGAGCTTATTACTTCACAGGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTCAAGAATAATCTAAGCCTAGAGGTAATTTATGGCGATACAGATTCAATAATGATTCACAGTGGACTGGATGATGTTGGCAAAGTAAAAGCAATTGCAGGAAAAGTTATACAAGAGGTTAACAAAAAGTACAAGTGCTTAGAAATTGATCTCGATGGTTTGTACAAGAGAATGTTGCTTCTGAAGAAAAAGAAGTATGCTGCTGTAAAGTTGCAGTTTAAGGATGGAATGCCATACGAGGTTATTGAGCGTAAGGGTCTTGATATGGTTCGGCGTGACTGGAGTTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAATCAAATATTGTCTGGAGGGTCATGCGAGGATGTCGTTGAATCAATACATGACTCACTTATGAAGATCCAAGAGGATATGAGGAAAGGGCAAGTTGCACTTGAGAAATATATCATCACGAAGACATTGACTAAGCCACCTGAAGCATATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCACAAAGGTTAAAACAAATGGGTTATACTACTGGCTGTTCTGTTGGTGACACGATCCCATATATAATTTGCTGTGAGCAGGAGTCTACTTCTGGTGGTTCTACAGGCATTGCTCAGCGGGCTAGACATCCTGATGAATTGAAAAAAGAGGATGGAAAATGGATGATTGACATCGAATACTATCTTTCACAGCAGATTCACCCAGTGGTCTCTCGTCTATGTGCCTCAATTCAGGGCACCAGCCCAGAACGCTTGGCTGATTGTCTGGGGCTTGATTCATCAAAGTTCCAAAACAGATCAATTGAAGTTTCCCGAAGTGATATCTCCACTTCCCTCCTGTGTTCTGTAAATGATGAAGAAAGGTATCAGGGATGCACACCGCTGACATTCACTTGCCCCAGCTGTTCTGGTACTTTTAATTGTCCTCCTATCTTTAGTTCCATATACAAATCTGCAGAAGGAAAGCAAGAAAGGCTAGTTGATGAACCTACAACCAAATTTTGGAATAATTTGCGTTGTCCAAAATGTCCCGACGAAGCTAATGCGGGTAGAATAACTCCTGGAATGATTGCCAACCAGGTGAAAAGGCAAGCAGATAGGTTCATTTCAATGTATTATAATGGCTTAATGATGTGTGATGATGAAACCTGCAAATATGCCACACGTGCCGTTAATCTTCGAGTTATGGGCGACTCTGAGAAAGGAACCATCTGCCCAAACTACCCCCACTGCAATGGGCATCTAGTAAGAAAGTACACAGAAGCCGATTTGTACAAGCAGCTTTCATATTTTAGTCACATTTTGGATACTGAACGCTGTATGGAAAAGTTGGAGGTTCATGCAAGGGTAACATTAGAGAAAGAAATGGCGAGTATTCGGCCAGTAGTCGAGTTAGCTGCAACGACAATTCAAAGCATTCGGGATCGGAGTGCATATGGCTGGGTGCAGTTGCAAAATTTTGTAGTAACATTTTGA 4644 43.11 MADEQPSASNRRRSRGSEAAARLTALERLKAIRSGGRRSEAGGFQVKLENPIYDTIPEDEYDALVAKRREEVRGFIVDDDGLGYGDEGEEEDWSKAGVCFSDESDGELDKPKKRKVVKKETQPKKPSSSSLTAAAAMMGKQKLSSMFTSSIFRKTGRDDKAKGLGCDSIVDDVIAEFAPDETDRERRRKGQIGAIPILRTVTSVPAVKSEGFTARGLNLTGESDFIKDAENGNSETTRVVTNSDLESVRGGVEVQGNGETKEFDSKDLNSQINLDPVEQLPNSLIKEDVSGDTMPIKVETKAEPLVKKEPVSTLNAKISNERDPALSATAEWQAVRSEGSGSVNSAAEMAEEKSEFDTDTDGSLPFYIVDAHEELFGANMGTVYLFGKVKAGDTFHSCCVVVKNMQRCIYAIPSASFLHSDEMLELQKDAEESQLSPADLRAKLQEVTAGLKNEMAKQLLDLNVSTFSMTPVKRKYAFERQDIPAGENYVIKINYPFKHPPLPADLKGELFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSRPASQRVSWCKFEVIVDSPKDVQTSTSSSKNLEIPPMIVTAINIKTIINERQSVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTVIRKLDGGIFPMGFAKESTDRNSKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSSMWSKIGRLKRSVMPKLGKGGNIFGSGASPGLMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTSHEIPKMYQASESLMNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKNSSYVKDKKIVKKRTNHGSEEKNVDQFDLDDGNVEAPNTDSGKGKKGPSYLGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSPDGVIPPLPSSRVTGVLPELLKNLVQRRRMVKSWMKNASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVKNNLSLEVIYGDTDSIMIHSGLDDVGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLNQILSGGSCEDVVESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYTTGCSVGDTIPYIICCEQESTSGGSTGIAQRARHPDELKKEDGKWMIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQNRSIEVSRSDISTSLLCSVNDEERYQGCTPLTFTCPSCSGTFNCPPIFSSIYKSAEGKQERLVDEPTTKFWNNLRCPKCPDEANAGRITPGMIANQVKRQADRFISMYYNGLMMCDDETCKYATRAVNLRVMGDSEKGTICPNYPHCNGHLVRKYTEADLYKQLSYFSHILDTERCMEKLEVHARVTLEKEMASIRPVVELAATTIQSIRDRSAYGWVQLQNFVVTF* 1548
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 13765648 13777020 + CsaV3_2G016500.1 Csa02g01434 519491
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01434 1547 MobiDBLite consensus disorder prediction 884 917 - -
Csa02g01434 1547 SUPERFAMILY Ribonuclease H-like 361 867 IPR012337 -
Csa02g01434 1547 SUPERFAMILY DNA/RNA polymerases 863 1315 IPR043502 -
Csa02g01434 1547 MobiDBLite consensus disorder prediction 88 116 - -
Csa02g01434 1547 Gene3D - 406 532 - -
Csa02g01434 1547 TIGRFAM pol2: DNA polymerase (pol2) 51 1297 - -
Csa02g01434 1547 Gene3D - 1143 1328 IPR042087 -
Csa02g01434 1547 CDD POLBc_alpha 912 1315 IPR045846 GO:0003887|GO:1902975
Csa02g01434 1547 MobiDBLite consensus disorder prediction 884 898 - -
Csa02g01434 1547 Pfam DNA polymerase family B, exonuclease domain 394 773 IPR006133 -
Csa02g01434 1547 Gene3D Palm domain of DNA polymerase 918 1123 IPR023211 -
Csa02g01434 1547 MobiDBLite consensus disorder prediction 1 18 - -
Csa02g01434 1547 Gene3D DNA Polymerase alpha, zinc finger 1338 1532 IPR038256 -
Csa02g01434 1547 PRINTS DNA-directed DNA-polymerase family B signature 936 949 IPR006172 GO:0000166|GO:0003676|GO:0003887
Csa02g01434 1547 PRINTS DNA-directed DNA-polymerase family B signature 1012 1024 IPR006172 GO:0000166|GO:0003676|GO:0003887
Csa02g01434 1547 PRINTS DNA-directed DNA-polymerase family B signature 1065 1073 IPR006172 GO:0000166|GO:0003676|GO:0003887
Csa02g01434 1547 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Csa02g01434 1547 Gene3D Helix hairpin bin 977 1028 - -
Csa02g01434 1547 Coils Coil 1093 1113 - -
Csa02g01434 1547 Gene3D - 366 565 - -
Csa02g01434 1547 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 281 1543 - -
Csa02g01434 1547 Pfam DNA polymerase family B 839 1299 IPR006134 GO:0000166|GO:0003677
Csa02g01434 1547 MobiDBLite consensus disorder prediction 1 20 - -
Csa02g01434 1547 PANTHER DNA POLYMERASE 281 1543 - -
Csa02g01434 1547 MobiDBLite consensus disorder prediction 78 132 - -
Csa02g01434 1547 Gene3D - 579 895 IPR036397 GO:0003676
Csa02g01434 1547 ProSitePatterns DNA polymerase family B signature. 1067 1075 IPR017964 GO:0000166|GO:0003676
Csa02g01434 1547 SMART polmehr3 579 1079 IPR006172 GO:0000166|GO:0003676|GO:0003887
Csa02g01434 1547 CDD DNA_polB_alpha_exo 579 830 - -
Csa02g01434 1547 Pfam DNA Polymerase alpha zinc finger 1339 1543 IPR015088 GO:0003887|GO:0006260
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01434 Csa-Chr2:13765648 Csa06g02735 Csa-Chr6:23884568 1.94E-50 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01434 K02320 - csv:101211201 3004.93