Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g01434 | ATGGCGGACGAACAGCCCTCAGCTTCTAATCGTCGGAGGAGCAGAGGATCTGAGGCTGCCGCCCGACTTACCGCTCTCGAACGTCTCAAAGCCATCCGCAGCGGTGGCCGTCGATCGGAAGCCGGTGGTTTCCAAGTGAAGTTGGAAAATCCTATCTACGATACGATTCCAGAGGATGAGTATGATGCTCTCGTTGCAAAGCGACGCGAGGAAGTCCGAGGGTTTATTGTTGATGACGACGGTCTTGGATATGGAGATGAAGGTGAGGAAGAGGATTGGTCGAAAGCTGGGGTTTGTTTTTCAGATGAGTCTGATGGTGAGCTGGACAAACCTAAGAAGAGGAAAGTGGTGAAGAAAGAGACGCAACCGAAGAAGCCCTCTTCTTCTTCTTTAACGGCGGCGGCAGCGATGATGGGGAAACAAAAGCTTTCTTCGATGTTTACTTCATCCATCTTCAGGAAAACGGGTAGAGACGATAAGGCTAAAGGATTGGGTTGTGATAGTATTGTGGATGATGTGATTGCTGAATTTGCTCCAGATGAGACTGATAGGGAGAGGCGTAGAAAGGGGCAAATTGGAGCTATACCGATTTTGAGGACTGTTACGTCTGTTCCTGCCGTGAAGTCCGAGGGATTCACTGCTCGGGGTCTTAATTTGACTGGTGAGTCTGACTTCATCAAGGATGCTGAAAATGGGAACTCGGAAACGACCAGGGTTGTTACAAACAGTGATTTGGAGTCTGTACGAGGTGGTGTGGAGGTCCAGGGAAATGGTGAAACTAAGGAATTTGATTCAAAGGACTTGAATTCTCAAATCAACTTGGATCCGGTTGAGCAATTACCTAATTCTTTGATCAAGGAAGATGTAAGTGGAGACACTATGCCAATTAAAGTTGAAACAAAGGCAGAACCGTTGGTGAAGAAGGAACCAGTGAGTACTTTGAATGCTAAGATTAGCAATGAAAGAGACCCAGCTTTGAGTGCTACTGCGGAATGGCAGGCAGTAAGGAGTGAAGGGAGTGGAAGTGTTAATTCTGCAGCAGAGATGGCTGAAGAGAAATCCGAATTTGATACCGACACTGACGGCTCTCTTCCTTTCTATATCGTTGATGCACATGAGGAGCTCTTCGGTGCAAATATGGGCACTGTATATCTATTTGGGAAGGTCAAAGCTGGGGATACGTTCCACAGTTGTTGTGTGGTGGTGAAAAATATGCAAAGATGCATATATGCCATTCCAAGTGCTTCTTTTCTCCATTCGGATGAGATGTTGGAGCTCCAGAAGGATGCTGAAGAGTCTCAGCTTTCTCCTGCAGACCTGCGTGCCAAATTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATGGCTAAGCAGTTGCTAGACCTCAATGTTTCAACATTTAGCATGACACCGGTTAAGAGGAAATATGCATTTGAGCGTCAAGACATACCTGCAGGGGAGAATTATGTGATTAAGATTAATTACCCATTCAAGCACCCCCCACTTCCCGCTGATCTAAAAGGAGAATTGTTCTGTGCTCTTTTAGGAACACATCGCAGTGCCTTAGAGCTTCTCCTCATTAAAAGGAAAATTAAGGGCCCCTCCTGGTTGTCAATTTCAAAATTTTCTTCTCGTCCTGCTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTTGACTCTCCAAAAGATGTGCAAACTTCAACGTCATCAAGCAAAAATTTGGAGATTCCTCCTATGATTGTCACTGCAATAAACATAAAGACCATCATTAATGAAAGGCAGAGTGTCAACGAAATTGTGTCTGCATCTGTCATATGCTGTCAAAGAGCAAAGATTGACGGTCCCATGTTGGCCACAGAATGGAAGAAGCCTGGTATGCTAAGGCATTTTACTGTCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAGTCCACTGATAGAAATTCGAAGGCTGGATCAAATGTTCTGATCTGCGAGGGCAATGAAAGGGCCTTGTTGAATAGGTTAATGATCGAATTATTCAAATTGGATAGTGATGTGCTGGTTGGACACAATATCTCTGGGTTTGATTTAGATGTTCTTCTCCATCGAGCACAGTTTTGCCGAGTACCAAGCAGCATGTGGTCCAAAATAGGCCGCCTTAAGCGGTCTGTAATGCCAAAACTTGGAAAGGGAGGGAACATTTTTGGGTCTGGAGCAAGTCCAGGACTCATGTCTTGCATTGCTGGTCGACTCTTATGTGATACGTACTTGTCTTCCCGTGACCTATTGAAGGAGATAAGTTATTCTTTGACAGAGCTAGCAAAAACTCAACTTAATAAGGACCGCAAGGAAGTCACTTCACATGAAATTCCAAAAATGTACCAGGCATCCGAGTCTCTCATGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCCCTTACTCGACAGTTAACTAATATCAGTGGTAACCTCTGGGGAAGAAGTCTACAGGGTGCTAGAGCCCAGAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCAAAAAATATATTGTCCCCGACAAGAATTCATCTTATGTGAAAGATAAAAAGATTGTAAAAAAGAGAACAAATCATGGATCTGAGGAAAAAAATGTTGATCAATTTGATTTGGATGATGGAAATGTAGAAGCTCCCAATACTGACAGTGGAAAGGGCAAAAAGGGACCCTCCTATTTAGGTGGGCTAGTCTTGGAGCCAAAGCGAGGTTTATATGATAAGTATGTATTGCTCCTGGACTTTAACAGTCTGTACCCTTCTATCATTCAGGAATATAATATTTGCTTTACCACTGTTGAAAGATCCCCAGATGGTGTTATTCCTCCTCTGCCATCTAGTAGAGTGACGGGAGTTCTTCCTGAGTTGCTTAAAAATCTGGTTCAGAGAAGAAGAATGGTGAAGTCATGGATGAAGAATGCCTCTGGTCTCAAGCTTCAGCAACTTGACATTCAGCAGCAGGCACTAAAGCTCACTGCAAACAGTATGTATGGATGTCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTAGCAGAGCTTATTACTTCACAGGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTCAAGAATAATCTAAGCCTAGAGGTAATTTATGGCGATACAGATTCAATAATGATTCACAGTGGACTGGATGATGTTGGCAAAGTAAAAGCAATTGCAGGAAAAGTTATACAAGAGGTTAACAAAAAGTACAAGTGCTTAGAAATTGATCTCGATGGTTTGTACAAGAGAATGTTGCTTCTGAAGAAAAAGAAGTATGCTGCTGTAAAGTTGCAGTTTAAGGATGGAATGCCATACGAGGTTATTGAGCGTAAGGGTCTTGATATGGTTCGGCGTGACTGGAGTTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAATCAAATATTGTCTGGAGGGTCATGCGAGGATGTCGTTGAATCAATACATGACTCACTTATGAAGATCCAAGAGGATATGAGGAAAGGGCAAGTTGCACTTGAGAAATATATCATCACGAAGACATTGACTAAGCCACCTGAAGCATATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCACAAAGGTTAAAACAAATGGGTTATACTACTGGCTGTTCTGTTGGTGACACGATCCCATATATAATTTGCTGTGAGCAGGAGTCTACTTCTGGTGGTTCTACAGGCATTGCTCAGCGGGCTAGACATCCTGATGAATTGAAAAAAGAGGATGGAAAATGGATGATTGACATCGAATACTATCTTTCACAGCAGATTCACCCAGTGGTCTCTCGTCTATGTGCCTCAATTCAGGGCACCAGCCCAGAACGCTTGGCTGATTGTCTGGGGCTTGATTCATCAAAGTTCCAAAACAGATCAATTGAAGTTTCCCGAAGTGATATCTCCACTTCCCTCCTGTGTTCTGTAAATGATGAAGAAAGGTATCAGGGATGCACACCGCTGACATTCACTTGCCCCAGCTGTTCTGGTACTTTTAATTGTCCTCCTATCTTTAGTTCCATATACAAATCTGCAGAAGGAAAGCAAGAAAGGCTAGTTGATGAACCTACAACCAAATTTTGGAATAATTTGCGTTGTCCAAAATGTCCCGACGAAGCTAATGCGGGTAGAATAACTCCTGGAATGATTGCCAACCAGGTGAAAAGGCAAGCAGATAGGTTCATTTCAATGTATTATAATGGCTTAATGATGTGTGATGATGAAACCTGCAAATATGCCACACGTGCCGTTAATCTTCGAGTTATGGGCGACTCTGAGAAAGGAACCATCTGCCCAAACTACCCCCACTGCAATGGGCATCTAGTAAGAAAGTACACAGAAGCCGATTTGTACAAGCAGCTTTCATATTTTAGTCACATTTTGGATACTGAACGCTGTATGGAAAAGTTGGAGGTTCATGCAAGGGTAACATTAGAGAAAGAAATGGCGAGTATTCGGCCAGTAGTCGAGTTAGCTGCAACGACAATTCAAAGCATTCGGGATCGGAGTGCATATGGCTGGGTGCAGTTGCAAAATTTTGTAGTAACATTTTGA | 4644 | 43.11 | MADEQPSASNRRRSRGSEAAARLTALERLKAIRSGGRRSEAGGFQVKLENPIYDTIPEDEYDALVAKRREEVRGFIVDDDGLGYGDEGEEEDWSKAGVCFSDESDGELDKPKKRKVVKKETQPKKPSSSSLTAAAAMMGKQKLSSMFTSSIFRKTGRDDKAKGLGCDSIVDDVIAEFAPDETDRERRRKGQIGAIPILRTVTSVPAVKSEGFTARGLNLTGESDFIKDAENGNSETTRVVTNSDLESVRGGVEVQGNGETKEFDSKDLNSQINLDPVEQLPNSLIKEDVSGDTMPIKVETKAEPLVKKEPVSTLNAKISNERDPALSATAEWQAVRSEGSGSVNSAAEMAEEKSEFDTDTDGSLPFYIVDAHEELFGANMGTVYLFGKVKAGDTFHSCCVVVKNMQRCIYAIPSASFLHSDEMLELQKDAEESQLSPADLRAKLQEVTAGLKNEMAKQLLDLNVSTFSMTPVKRKYAFERQDIPAGENYVIKINYPFKHPPLPADLKGELFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSRPASQRVSWCKFEVIVDSPKDVQTSTSSSKNLEIPPMIVTAINIKTIINERQSVNEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTVIRKLDGGIFPMGFAKESTDRNSKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSSMWSKIGRLKRSVMPKLGKGGNIFGSGASPGLMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTSHEIPKMYQASESLMNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKNSSYVKDKKIVKKRTNHGSEEKNVDQFDLDDGNVEAPNTDSGKGKKGPSYLGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSPDGVIPPLPSSRVTGVLPELLKNLVQRRRMVKSWMKNASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVKNNLSLEVIYGDTDSIMIHSGLDDVGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLNQILSGGSCEDVVESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYTTGCSVGDTIPYIICCEQESTSGGSTGIAQRARHPDELKKEDGKWMIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQNRSIEVSRSDISTSLLCSVNDEERYQGCTPLTFTCPSCSGTFNCPPIFSSIYKSAEGKQERLVDEPTTKFWNNLRCPKCPDEANAGRITPGMIANQVKRQADRFISMYYNGLMMCDDETCKYATRAVNLRVMGDSEKGTICPNYPHCNGHLVRKYTEADLYKQLSYFSHILDTERCMEKLEVHARVTLEKEMASIRPVVELAATTIQSIRDRSAYGWVQLQNFVVTF* | 1548 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 13765648 | 13777020 | + | CsaV3_2G016500.1 | Csa02g01434 | 519491 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g01434 | 1547 | MobiDBLite | consensus disorder prediction | 884 | 917 | - | - | |
Csa02g01434 | 1547 | SUPERFAMILY | Ribonuclease H-like | 361 | 867 | IPR012337 | - | |
Csa02g01434 | 1547 | SUPERFAMILY | DNA/RNA polymerases | 863 | 1315 | IPR043502 | - | |
Csa02g01434 | 1547 | MobiDBLite | consensus disorder prediction | 88 | 116 | - | - | |
Csa02g01434 | 1547 | Gene3D | - | 406 | 532 | - | - | |
Csa02g01434 | 1547 | TIGRFAM | pol2: DNA polymerase (pol2) | 51 | 1297 | - | - | |
Csa02g01434 | 1547 | Gene3D | - | 1143 | 1328 | IPR042087 | - | |
Csa02g01434 | 1547 | CDD | POLBc_alpha | 912 | 1315 | IPR045846 | GO:0003887|GO:1902975 | |
Csa02g01434 | 1547 | MobiDBLite | consensus disorder prediction | 884 | 898 | - | - | |
Csa02g01434 | 1547 | Pfam | DNA polymerase family B, exonuclease domain | 394 | 773 | IPR006133 | - | |
Csa02g01434 | 1547 | Gene3D | Palm domain of DNA polymerase | 918 | 1123 | IPR023211 | - | |
Csa02g01434 | 1547 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Csa02g01434 | 1547 | Gene3D | DNA Polymerase alpha, zinc finger | 1338 | 1532 | IPR038256 | - | |
Csa02g01434 | 1547 | PRINTS | DNA-directed DNA-polymerase family B signature | 936 | 949 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Csa02g01434 | 1547 | PRINTS | DNA-directed DNA-polymerase family B signature | 1012 | 1024 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Csa02g01434 | 1547 | PRINTS | DNA-directed DNA-polymerase family B signature | 1065 | 1073 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Csa02g01434 | 1547 | Pfam | DNA polymerase alpha subunit p180 N terminal | 26 | 93 | IPR024647 | - | |
Csa02g01434 | 1547 | Gene3D | Helix hairpin bin | 977 | 1028 | - | - | |
Csa02g01434 | 1547 | Coils | Coil | 1093 | 1113 | - | - | |
Csa02g01434 | 1547 | Gene3D | - | 366 | 565 | - | - | |
Csa02g01434 | 1547 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 281 | 1543 | - | - | |
Csa02g01434 | 1547 | Pfam | DNA polymerase family B | 839 | 1299 | IPR006134 | GO:0000166|GO:0003677 | |
Csa02g01434 | 1547 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Csa02g01434 | 1547 | PANTHER | DNA POLYMERASE | 281 | 1543 | - | - | |
Csa02g01434 | 1547 | MobiDBLite | consensus disorder prediction | 78 | 132 | - | - | |
Csa02g01434 | 1547 | Gene3D | - | 579 | 895 | IPR036397 | GO:0003676 | |
Csa02g01434 | 1547 | ProSitePatterns | DNA polymerase family B signature. | 1067 | 1075 | IPR017964 | GO:0000166|GO:0003676 | |
Csa02g01434 | 1547 | SMART | polmehr3 | 579 | 1079 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Csa02g01434 | 1547 | CDD | DNA_polB_alpha_exo | 579 | 830 | - | - | |
Csa02g01434 | 1547 | Pfam | DNA Polymerase alpha zinc finger | 1339 | 1543 | IPR015088 | GO:0003887|GO:0006260 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01434 | Csa-Chr2:13765648 | Csa06g02735 | Csa-Chr6:23884568 | 1.94E-50 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g01434 | K02320 | - | csv:101211201 | 3004.93 |