Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01443 ATGGGGGTATCATTACTTAAAGTGCTTCTTAGGCATATATCATCATTTCTTCAACTTTCATCTTCTGACTACATAAATTTACAACCAACTTTGAAGTACTACCATAAAATAGAAGGGGCCTTGAAACTATTAAGACCAATACTGGATGCGGTTGTTGATTCAGATATAGCTTCTGATGAAGAGCTTACTCAGGCATTTGAAGAACTTGATCATTCAGTGGATGAACTAAGGGTGCTCTTCGAAAATTGGCAACCGTTGTCAAGTAAAGTATACTTTGTATTGCAAAGTGAAACATTGATATCAAAGATTGGGAAATTTAGCTTGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTTCCGGAGGAGCTGAGTTCAAAATCTCTTGAGCACTGCGTACAAAAAATTAAGAATATTGGAAAGGAAGAAATATCTTCCGTTATCAAAGATGCCATAAGGAATCAAGTAGATGGCATTGCTCCCAGCTCAGATGTTTTGGTTAAACTTGCGGATTCCCTAAGCTTGAGATCAAATCAGGCGATCTTAATTGAGGCTGTGGCCCTTGAAAAATTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGCAGAGGACATTGATCAAATGATTGGTCTTGTAACCCGTATGCATGAACGACTTATTATGATAAAGCAGTCCCAAAGTTCTAGTCCTGTATCAATACCTCCTGACTTCTGCTGTCCTCTTTCTCTAGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGAGTGTTTATTAAAAATTGGATTGATCAGGGTCTCAACGTTTGCCCAAAAACTAGACAGACATTGGTTCACACAAATCTCATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGACACAAACAATGTGAAATTGTCTGATCCCTCAAAGTCAGTGAACTTAAACCAGATTTCTCCTCTTCTAGTTGGGAGCTTTGAGCCTGATACCCATCGAGAACCCCTTTTTCCTCATTCCCCTGGCTACCAACCAATGTCTCCTCAGTCAACCAGGTCTGCAGGTTCAGGAAAGAATTCGAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCCCCCACTCTCTGTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAAGGAGCGATTGAAGTTGATAGACTGTTGCTTTCAAGTTCAGAAGATCAAATGGCCAAACTGGAAGAAAATGGTTGTGATCCGGTTGCTAAACCATCTATGTCACCATCTAGAACCAATGTTCTAAATTCCTGTGGTGAGGATGAACCGTCTCATAGTCATAACAGGTCTTCCTCCACCTCTAGTGGAGTCTCAAATGCTAATCACTCTCGGGGAACTTCAGGAGAAGCCAATGAAGCAACTCACTTGTCAACAAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCCCAACAACCAACCACAGAGAACCAGAGCGGGAGCATCCACCCAGACTAGCTGACCACCCAAGGCCTCGAGGTAATACAATGTGGCTCCGGCCGTCAGAGAGGTTTGCCTCTAGAATAATTACATCATCTGCTAATGAGACAAGGCCGGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAAAGCAGTTCACTTGACACTTTAAGAGGTGCTACAGCTGAATTGCGGCTGCTGGCCAAGCATAATATGGACAACCGGATAGTAATTGCCCAATGTGGGGCCATTGATTATTTGGTTGGTTTGCTCCTCTCCGAAGACTCTAAGATCCAGGAGAATGCTGTGACAGCACTTCTAAACTTATCCATCAATGATAATAACAAAAGCGCAATTGCCCAGGCTAATGCCATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCAAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGGGCAATAGGACCTCTGGTTGAATTATTGGGCAATGGAACTCCAAGGGGAAAGAAGGATGCAGCAACAGCGCTGTTTAATTTGTCAATATTCCATGAGAACAAAGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACGATTCCTGAGGGTAGGTCTGCAATTGGCCAGGAAGGTGGAATTCCCGTTCTGGTTGAAGTCGTTGAGTTGGGTTCTGCAAGAGGAAAAGAAAATGCGGCAGCAGCACTATTGCAGCTTTGCACAACAAGCAATAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCTGTTCCACCATTAGTGGCATTGTCTCAATCTGGCACTGCTAGAGCTAAAGAAAAGGCCCAAGCACTTCTAAGCCATTTCAGAAGCCAGAGACATGGCAATTCAGGAAGAGGGTAA 2526 43.51 MGVSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKIEGALKLLRPILDAVVDSDIASDEELTQAFEELDHSVDELRVLFENWQPLSSKVYFVLQSETLISKIGKFSLDIFQLLQSSNENLPEELSSKSLEHCVQKIKNIGKEEISSVIKDAIRNQVDGIAPSSDVLVKLADSLSLRSNQAILIEAVALEKLKESAEQAENTGEAEDIDQMIGLVTRMHERLIMIKQSQSSSPVSIPPDFCCPLSLELMTDPVIVASGQTYERVFIKNWIDQGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPSKSVNLNQISPLLVGSFEPDTHREPLFPHSPGYQPMSPQSTRSAGSGKNSNSLGGTHRDGSSSLLPHSLSEDSLSNDAGDEGAIEVDRLLLSSSEDQMAKLEENGCDPVAKPSMSPSRTNVLNSCGEDEPSHSHNRSSSTSSGVSNANHSRGTSGEANEATHLSTNLTGYGSDAAGESKSEPLAAATPTTNHREPEREHPPRLADHPRPRGNTMWLRPSERFASRIITSSANETRPDLSAIEAQVQKVVEELKSSSLDTLRGATAELRLLAKHNMDNRIVIAQCGAIDYLVGLLLSEDSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG* 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13832014 13839711 - CsaV3_2G016590.1 Csa02g01443 519500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01443 841 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Csa02g01443 841 MobiDBLite consensus disorder prediction 504 519 - -
Csa02g01443 841 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Csa02g01443 841 Pfam Armadillo/beta-catenin-like repeat 628 667 IPR000225 GO:0005515
Csa02g01443 841 Pfam Armadillo/beta-catenin-like repeat 589 626 IPR000225 GO:0005515
Csa02g01443 841 Pfam Armadillo/beta-catenin-like repeat 671 708 IPR000225 GO:0005515
Csa02g01443 841 Gene3D - 536 837 IPR011989 -
Csa02g01443 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Csa02g01443 841 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Csa02g01443 841 MobiDBLite consensus disorder prediction 418 528 - -
Csa02g01443 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 680 722 IPR000225 GO:0005515
Csa02g01443 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 721 762 IPR000225 GO:0005515
Csa02g01443 841 PANTHER U BOX DOMAIN-CONTAINING 8 837 - -
Csa02g01443 841 SMART arm_5 669 709 IPR000225 GO:0005515
Csa02g01443 841 SMART arm_5 587 627 IPR000225 GO:0005515
Csa02g01443 841 SMART arm_5 792 832 IPR000225 GO:0005515
Csa02g01443 841 SMART arm_5 628 668 IPR000225 GO:0005515
Csa02g01443 841 SMART arm_5 750 790 IPR000225 GO:0005515
Csa02g01443 841 SMART arm_5 710 749 IPR000225 GO:0005515
Csa02g01443 841 MobiDBLite consensus disorder prediction 426 441 - -
Csa02g01443 841 MobiDBLite consensus disorder prediction 333 392 - -
Csa02g01443 841 SUPERFAMILY RING/U-box 225 312 - -
Csa02g01443 841 MobiDBLite consensus disorder prediction 448 486 - -
Csa02g01443 841 CDD RING-Ubox_PUB 240 282 IPR045210 -
Csa02g01443 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 598 640 IPR000225 GO:0005515
Csa02g01443 841 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 837 - -
Csa02g01443 841 Coils Coil 189 209 - -
Csa02g01443 841 SUPERFAMILY ARM repeat 557 830 IPR016024 -
Csa02g01443 841 MobiDBLite consensus disorder prediction 346 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00824 Csa-Chr1:5199945 Csa02g01443 Csa-Chr2:13832014 3.04E-10 dispersed
Csa02g01443 Csa-Chr2:13832014 Csa07g01631 Csa-Chr7:16808258 6.86E-55 dispersed
Csa07g01634 Csa-Chr7:16826170 Csa02g01443 Csa-Chr2:13832014 2.34E-08 dispersed
Csa02g01897 Csa-Chr2:17950407 Csa02g01443 Csa-Chr2:13832014 5.68E-84 transposed
Csa03g00758 Csa-Chr3:6697008 Csa02g01443 Csa-Chr2:13832014 1.56E-11 transposed
Csa03g02706 Csa-Chr3:25863160 Csa02g01443 Csa-Chr2:13832014 2.37E-12 transposed
Csa03g04350 Csa-Chr3:38005092 Csa02g01443 Csa-Chr2:13832014 4.87E-17 transposed
Csa05g01582 Csa-Chr5:18661547 Csa02g01443 Csa-Chr2:13832014 1.50E-32 transposed
Csa05g02014 Csa-Chr5:23513918 Csa02g01443 Csa-Chr2:13832014 3.54E-06 transposed
Csa06g00972 Csa-Chr6:7861167 Csa02g01443 Csa-Chr2:13832014 7.38E-28 transposed
Csa06g03458 Csa-Chr6:28405526 Csa02g01443 Csa-Chr2:13832014 1.59E-81 transposed
Csa02g01443 Csa-Chr2:13832014 Csa06g02988 Csa-Chr6:25798494 1.74E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01443 - - csv:101212423 1583.54