Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01443 ATGGGGGTATCATTACTTAAAGTGCTTCTTAGGCATATATCATCATTTCTTCAACTTTCATCTTCTGACTACATAAATTTACAACCAACTTTGAAGTACTACCATAAAATAGAAGGGGCCTTGAAACTATTAAGACCAATACTGGATGCGGTTGTTGATTCAGATATAGCTTCTGATGAAGAGCTTACTCAGGCATTTGAAGAACTTGATCATTCAGTGGATGAACTAAGGGTGCTCTTCGAAAATTGGCAACCGTTGTCAAGTAAAGTATACTTTGTATTGCAAAGTGAAACATTGATATCAAAGATTGGGAAATTTAGCTTGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTTCCGGAGGAGCTGAGTTCAAAATCTCTTGAGCACTGCGTACAAAAAATTAAGAATATTGGAAAGGAAGAAATATCTTCCGTTATCAAAGATGCCATAAGGAATCAAGTAGATGGCATTGCTCCCAGCTCAGATGTTTTGGTTAAACTTGCGGATTCCCTAAGCTTGAGATCAAATCAGGCGATCTTAATTGAGGCTGTGGCCCTTGAAAAATTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGCAGAGGACATTGATCAAATGATTGGTCTTGTAACCCGTATGCATGAACGACTTATTATGATAAAGCAGTCCCAAAGTTCTAGTCCTGTATCAATACCTCCTGACTTCTGCTGTCCTCTTTCTCTAGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGAGTGTTTATTAAAAATTGGATTGATCAGGGTCTCAACGTTTGCCCAAAAACTAGACAGACATTGGTTCACACAAATCTCATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGACACAAACAATGTGAAATTGTCTGATCCCTCAAAGTCAGTGAACTTAAACCAGATTTCTCCTCTTCTAGTTGGGAGCTTTGAGCCTGATACCCATCGAGAACCCCTTTTTCCTCATTCCCCTGGCTACCAACCAATGTCTCCTCAGTCAACCAGGTCTGCAGGTTCAGGAAAGAATTCGAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCCCCCACTCTCTGTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAAGGAGCGATTGAAGTTGATAGACTGTTGCTTTCAAGTTCAGAAGATCAAATGGCCAAACTGGAAGAAAATGGTTGTGATCCGGTTGCTAAACCATCTATGTCACCATCTAGAACCAATGTTCTAAATTCCTGTGGTGAGGATGAACCGTCTCATAGTCATAACAGGTCTTCCTCCACCTCTAGTGGAGTCTCAAATGCTAATCACTCTCGGGGAACTTCAGGAGAAGCCAATGAAGCAACTCACTTGTCAACAAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCCCAACAACCAACCACAGAGAACCAGAGCGGGAGCATCCACCCAGACTAGCTGACCACCCAAGGCCTCGAGGTAATACAATGTGGCTCCGGCCGTCAGAGAGGTTTGCCTCTAGAATAATTACATCATCTGCTAATGAGACAAGGCCGGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAAAGCAGTTCACTTGACACTTTAAGAGGTGCTACAGCTGAATTGCGGCTGCTGGCCAAGCATAATATGGACAACCGGATAGTAATTGCCCAATGTGGGGCCATTGATTATTTGGTTGGTTTGCTCCTCTCCGAAGACTCTAAGATCCAGGAGAATGCTGTGACAGCACTTCTAAACTTATCCATCAATGATAATAACAAAAGCGCAATTGCCCAGGCTAATGCCATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCAAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGGGCAATAGGACCTCTGGTTGAATTATTGGGCAATGGAACTCCAAGGGGAAAGAAGGATGCAGCAACAGCGCTGTTTAATTTGTCAATATTCCATGAGAACAAAGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACGATTCCTGAGGGTAGGTCTGCAATTGGCCAGGAAGGTGGAATTCCCGTTCTGGTTGAAGTCGTTGAGTTGGGTTCTGCAAGAGGAAAAGAAAATGCGGCAGCAGCACTATTGCAGCTTTGCACAACAAGCAATAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCTGTTCCACCATTAGTGGCATTGTCTCAATCTGGCACTGCTAGAGCTAAAGAAAAGGCCCAAGCACTTCTAAGCCATTTCAGAAGCCAGAGACATGGCAATTCAGGAAGAGGGTAA 2526 43.51 MGVSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKIEGALKLLRPILDAVVDSDIASDEELTQAFEELDHSVDELRVLFENWQPLSSKVYFVLQSETLISKIGKFSLDIFQLLQSSNENLPEELSSKSLEHCVQKIKNIGKEEISSVIKDAIRNQVDGIAPSSDVLVKLADSLSLRSNQAILIEAVALEKLKESAEQAENTGEAEDIDQMIGLVTRMHERLIMIKQSQSSSPVSIPPDFCCPLSLELMTDPVIVASGQTYERVFIKNWIDQGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPSKSVNLNQISPLLVGSFEPDTHREPLFPHSPGYQPMSPQSTRSAGSGKNSNSLGGTHRDGSSSLLPHSLSEDSLSNDAGDEGAIEVDRLLLSSSEDQMAKLEENGCDPVAKPSMSPSRTNVLNSCGEDEPSHSHNRSSSTSSGVSNANHSRGTSGEANEATHLSTNLTGYGSDAAGESKSEPLAAATPTTNHREPEREHPPRLADHPRPRGNTMWLRPSERFASRIITSSANETRPDLSAIEAQVQKVVEELKSSSLDTLRGATAELRLLAKHNMDNRIVIAQCGAIDYLVGLLLSEDSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG* 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13832014 13839711 - CsaV3_2G016590.1 Csa02g01443 519500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01443 841 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Csa02g01443 841 MobiDBLite consensus disorder prediction 504 519 - -
Csa02g01443 841 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Csa02g01443 841 Pfam Armadillo/beta-catenin-like repeat 628 667 IPR000225 GO:0005515
Csa02g01443 841 Pfam Armadillo/beta-catenin-like repeat 589 626 IPR000225 GO:0005515
Csa02g01443 841 Pfam Armadillo/beta-catenin-like repeat 671 708 IPR000225 GO:0005515
Csa02g01443 841 Gene3D - 536 837 IPR011989 -
Csa02g01443 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Csa02g01443 841 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Csa02g01443 841 MobiDBLite consensus disorder prediction 418 528 - -
Csa02g01443 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 680 722 IPR000225 GO:0005515
Csa02g01443 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 721 762 IPR000225 GO:0005515
Csa02g01443 841 PANTHER U BOX DOMAIN-CONTAINING 8 837 - -
Csa02g01443 841 SMART arm_5 669 709 IPR000225 GO:0005515
Csa02g01443 841 SMART arm_5 587 627 IPR000225 GO:0005515
Csa02g01443 841 SMART arm_5 792 832 IPR000225 GO:0005515
Csa02g01443 841 SMART arm_5 628 668 IPR000225 GO:0005515
Csa02g01443 841 SMART arm_5 750 790 IPR000225 GO:0005515
Csa02g01443 841 SMART arm_5 710 749 IPR000225 GO:0005515
Csa02g01443 841 MobiDBLite consensus disorder prediction 426 441 - -
Csa02g01443 841 MobiDBLite consensus disorder prediction 333 392 - -
Csa02g01443 841 SUPERFAMILY RING/U-box 225 312 - -
Csa02g01443 841 MobiDBLite consensus disorder prediction 448 486 - -
Csa02g01443 841 CDD RING-Ubox_PUB 240 282 IPR045210 -
Csa02g01443 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 598 640 IPR000225 GO:0005515
Csa02g01443 841 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 837 - -
Csa02g01443 841 Coils Coil 189 209 - -
Csa02g01443 841 SUPERFAMILY ARM repeat 557 830 IPR016024 -
Csa02g01443 841 MobiDBLite consensus disorder prediction 346 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01443 - - - csv:101212423 1583.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00824 Csa-Chr1:5199945 Csa02g01443 Csa-Chr2:13832014 3.04E-10 dispersed
Csa02g01443 Csa-Chr2:13832014 Csa07g01631 Csa-Chr7:16808258 6.86E-55 dispersed
Csa07g01634 Csa-Chr7:16826170 Csa02g01443 Csa-Chr2:13832014 2.34E-08 dispersed
Csa02g01897 Csa-Chr2:17950407 Csa02g01443 Csa-Chr2:13832014 5.68E-84 transposed
Csa03g00758 Csa-Chr3:6697008 Csa02g01443 Csa-Chr2:13832014 1.56E-11 transposed
Csa03g02706 Csa-Chr3:25863160 Csa02g01443 Csa-Chr2:13832014 2.37E-12 transposed
Csa03g04350 Csa-Chr3:38005092 Csa02g01443 Csa-Chr2:13832014 4.87E-17 transposed
Csa05g01582 Csa-Chr5:18661547 Csa02g01443 Csa-Chr2:13832014 1.50E-32 transposed
Csa05g02014 Csa-Chr5:23513918 Csa02g01443 Csa-Chr2:13832014 3.54E-06 transposed
Csa06g00972 Csa-Chr6:7861167 Csa02g01443 Csa-Chr2:13832014 7.38E-28 transposed
Csa06g03458 Csa-Chr6:28405526 Csa02g01443 Csa-Chr2:13832014 1.59E-81 transposed
Csa02g01443 Csa-Chr2:13832014 Csa06g02988 Csa-Chr6:25798494 1.74E-139 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g03801 . 1 1044 U-box Gene Family AT5G15400 75.9 0.0e+00 1568.9
Csa02g01443 . 196 842 U-box Gene Family AT2G23140 66.2 9.2e-122 434.5
Csa02g01820 . 1 776 U-box Gene Family AT1G24330 59.3 1.8e-244 842.4
Csa05g02223 . 1 758 U-box Gene Family AT1G24330 58.2 1.6e-229 792.7
Csa02g01820 . 1 775 U-box Gene Family AT1G67530 59.1 1.2e-240 829.7
Csa05g02223 . 1 758 U-box Gene Family AT1G67530 57.0 1.7e-223 772.7
Csa06g03568 . 1 362 U-box Gene Family AT4G21350 62.1 2.3e-120 429.1
Csa03g02707 . 135 462 U-box Gene Family AT3G07360 54.4 1.1e-78 290.4
Csa05g01046 . 269 456 U-box Gene Family AT1G71020 71.4 9.2e-74 274.6
Csa05g02038 . 246 457 U-box Gene Family AT1G71020 54.5 8.1e-54 208.4
Csa01g02400 CCT 259 428 U-box Gene Family AT1G71020 57.8 3.9e-48 189.5
Csa05g02787 . 246 413 U-box Gene Family AT1G71020 58.5 5.1e-48 189.1
Csa06g01498 CCT 254 423 U-box Gene Family AT1G71020 55.4 1.4e-45 181.0
Csa05g01046 . 16 660 U-box Gene Family AT1G23030 56.7 1.0e-109 394.4
Csa01g02400 CCT 94 632 U-box Gene Family AT2G28830 53.4 9.6e-102 367.9
Csa06g01498 CCT 93 633 U-box Gene Family AT2G28830 50.9 1.2e-99 360.9
Csa01g02400 CCT 1 642 U-box Gene Family AT3G46510 72.4 3.2e-178 622.1
Csa06g01498 CCT 11 647 U-box Gene Family AT3G46510 65.8 4.8e-158 555.1
Csa05g02787 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Csa05g02787 . 9 619 U-box Gene Family AT3G54850 69.6 1.7e-168 589.7
Csa01g02400 CCT 9 631 U-box Gene Family AT3G54850 59.5 1.4e-122 437.2
Csa06g01498 CCT 13 626 U-box Gene Family AT3G54850 57.5 1.3e-115 414.1
Csa06g01017 . 169 721 U-box Gene Family AT5G42340 66.0 4.6e-124 442.2
Csa04g01681 . 9 671 U-box Gene Family AT5G01830 57.7 5.0e-195 677.9
Csa01g02298 . 1 714 U-box Gene Family AT1G29340 67.2 2.0e-245 845.5
Csa03g02112 . 27 443 U-box Gene Family AT5G37490 52.0 3.5e-112 402.1
Csa04g01150 . 4 423 U-box Gene Family AT3G52450 50.6 1.4e-113 406.8
Csa03g03495 . 1 404 U-box Gene Family AT2G35930 55.4 6.6e-121 431.0
Csa06g02471 . 12 412 U-box Gene Family AT2G35930 52.0 4.9e-116 414.8
Csa03g01844 . 9 424 U-box Gene Family AT3G19380 64.2 2.1e-146 515.8
Csa03g01844 . 1 424 U-box Gene Family AT1G49780 64.3 6.2e-151 530.8
Csa06g02795 . 1 403 U-box Gene Family AT5G64660 55.7 5.1e-121 431.4
Csa06g02795 . 1 403 U-box Gene Family AT5G09800 50.9 5.0e-105 378.3
Csa04g02494 CCT 1 454 U-box Gene Family AT3G49810 63.5 6.8e-156 547.4
Csa02g01879 CCT 24 479 U-box Gene Family AT3G49810 62.3 1.0e-151 533.5
Csa02g01879 CCT 24 479 U-box Gene Family AT5G65920 62.5 2.5e-150 528.9
Csa04g02494 CCT 1 454 U-box Gene Family AT5G65920 62.4 1.2e-149 526.6
Csa03g00887 CCT 1 874 U-box Gene Family AT2G45910 51.1 1.1e-228 790.0
Csa02g00037 . 11 733 U-box Gene Family AT2G19410 50.7 4.6e-208 721.5
Csa05g00483 . 24 807 U-box Gene Family AT4G25160 52.6 4.4e-225 778.1
Csa05g02927 . 39 555 U-box Gene Family AT5G40140 55.6 5.9e-93 338.6
Csa01g00180 . 27 537 U-box Gene Family AT5G40140 51.9 6.0e-69 258.8
Csa01g00824 . 29 498 U-box Gene Family AT5G40140 50.6 1.9e-54 210.7
Csa06g01954 . 4 815 U-box Gene Family AT1G76390 60.4 1.9e-265 912.1
Csa06g01954 . 13 815 U-box Gene Family AT1G20780 61.0 5.0e-274 940.6
Csa02g01820 . 1 779 U-box Gene Family AT1G27910 62.4 2.7e-269 924.9
Csa05g02223 . 1 768 U-box Gene Family AT1G27910 63.3 1.5e-264 909.1
Csa06g03023 . 1 593 U-box Gene Family AT5G67530 74.6 4.0e-260 894.0
Csa03g03444 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Csa05g00483 . 25 807 U-box Gene Family AT5G61550 50.7 7.7e-225 777.3
Csa03g01174 . 4 489 U-box Gene Family AT1G04510 73.9 9.3e-205 709.9
Csa03g01174 . 4 458 U-box Gene Family AT2G33340 72.6 6.4e-192 667.2
Csa03g02706 . 14 280 U-box Gene Family AT3G07370 66.7 3.9e-101 364.8
Csa03g03801 . 1 1044 U-box Gene Family AT5G15400 75.9 0.0e+00 1568.9
Csa02g01443 . 196 842 U-box Gene Family AT2G23140 66.2 9.2e-122 434.5
Csa02g01820 . 1 776 U-box Gene Family AT1G24330 59.3 1.8e-244 842.4
Csa05g02223 . 1 758 U-box Gene Family AT1G24330 58.2 1.6e-229 792.7
Csa02g01820 . 1 775 U-box Gene Family AT1G67530 59.1 1.2e-240 829.7
Csa05g02223 . 1 758 U-box Gene Family AT1G67530 57.0 1.7e-223 772.7
Csa06g03568 . 1 362 U-box Gene Family AT4G21350 62.1 2.3e-120 429.1
Csa03g02707 . 135 462 U-box Gene Family AT3G07360 54.4 1.1e-78 290.4
Csa05g01046 . 269 456 U-box Gene Family AT1G71020 71.4 9.2e-74 274.6
Csa05g02038 . 246 457 U-box Gene Family AT1G71020 54.5 8.1e-54 208.4
Csa01g02400 CCT 259 428 U-box Gene Family AT1G71020 57.8 3.9e-48 189.5
Csa05g02787 . 246 413 U-box Gene Family AT1G71020 58.5 5.1e-48 189.1
Csa06g01498 CCT 254 423 U-box Gene Family AT1G71020 55.4 1.4e-45 181.0
Csa05g01046 . 16 660 U-box Gene Family AT1G23030 56.7 1.0e-109 394.4
Csa01g02400 CCT 94 632 U-box Gene Family AT2G28830 53.4 9.6e-102 367.9
Csa06g01498 CCT 93 633 U-box Gene Family AT2G28830 50.9 1.2e-99 360.9
Csa01g02400 CCT 1 642 U-box Gene Family AT3G46510 72.4 3.2e-178 622.1
Csa06g01498 CCT 11 647 U-box Gene Family AT3G46510 65.8 4.8e-158 555.1
Csa05g02787 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Csa05g02787 . 9 619 U-box Gene Family AT3G54850 69.6 1.7e-168 589.7
Csa01g02400 CCT 9 631 U-box Gene Family AT3G54850 59.5 1.4e-122 437.2
Csa06g01498 CCT 13 626 U-box Gene Family AT3G54850 57.5 1.3e-115 414.1
Csa06g01017 . 169 721 U-box Gene Family AT5G42340 66.0 4.6e-124 442.2
Csa04g01681 . 9 671 U-box Gene Family AT5G01830 57.7 5.0e-195 677.9
Csa01g02298 . 1 714 U-box Gene Family AT1G29340 67.2 2.0e-245 845.5
Csa03g02112 . 27 443 U-box Gene Family AT5G37490 52.0 3.5e-112 402.1
Csa04g01150 . 4 423 U-box Gene Family AT3G52450 50.6 1.4e-113 406.8
Csa03g03495 . 1 404 U-box Gene Family AT2G35930 55.4 6.6e-121 431.0
Csa06g02471 . 12 412 U-box Gene Family AT2G35930 52.0 4.9e-116 414.8
Csa03g01844 . 9 424 U-box Gene Family AT3G19380 64.2 2.1e-146 515.8
Csa03g01844 . 1 424 U-box Gene Family AT1G49780 64.3 6.2e-151 530.8
Csa06g02795 . 1 403 U-box Gene Family AT5G64660 55.7 5.1e-121 431.4
Csa06g02795 . 1 403 U-box Gene Family AT5G09800 50.9 5.0e-105 378.3
Csa04g02494 CCT 1 454 U-box Gene Family AT3G49810 63.5 6.8e-156 547.4
Csa02g01879 CCT 24 479 U-box Gene Family AT3G49810 62.3 1.0e-151 533.5
Csa02g01879 CCT 24 479 U-box Gene Family AT5G65920 62.5 2.5e-150 528.9
Csa04g02494 CCT 1 454 U-box Gene Family AT5G65920 62.4 1.2e-149 526.6
Csa03g00887 CCT 1 874 U-box Gene Family AT2G45910 51.1 1.1e-228 790.0
Csa02g00037 . 11 733 U-box Gene Family AT2G19410 50.7 4.6e-208 721.5
Csa05g00483 . 24 807 U-box Gene Family AT4G25160 52.6 4.4e-225 778.1
Csa05g02927 . 39 555 U-box Gene Family AT5G40140 55.6 5.9e-93 338.6
Csa01g00180 . 27 537 U-box Gene Family AT5G40140 51.9 6.0e-69 258.8
Csa01g00824 . 29 498 U-box Gene Family AT5G40140 50.6 1.9e-54 210.7
Csa06g01954 . 4 815 U-box Gene Family AT1G76390 60.4 1.9e-265 912.1
Csa06g01954 . 13 815 U-box Gene Family AT1G20780 61.0 5.0e-274 940.6
Csa02g01820 . 1 779 U-box Gene Family AT1G27910 62.4 2.7e-269 924.9
Csa05g02223 . 1 768 U-box Gene Family AT1G27910 63.3 1.5e-264 909.1
Csa06g03023 . 1 593 U-box Gene Family AT5G67530 74.6 4.0e-260 894.0
Csa03g03444 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Csa05g00483 . 25 807 U-box Gene Family AT5G61550 50.7 7.7e-225 777.3
Csa03g01174 . 4 489 U-box Gene Family AT1G04510 73.9 9.3e-205 709.9
Csa03g01174 . 4 458 U-box Gene Family AT2G33340 72.6 6.4e-192 667.2
Csa03g02706 . 14 280 U-box Gene Family AT3G07370 66.7 3.9e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004594 2 4 1 2 2 1 2 1 1 1 1 1 2 0 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01443 Csa_Chr02 FPKM 34.626656 39.092476 23.462564 22.02643 51.856998 53.759338 48.27911 11.48202 11.038729 10.419541