Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01459 ATGGATACCTTGTTAAGGTTGGTTAATGATCGTCTTGAATCCTCTGATCAATATTCTTATAACAATAATTCAAGCAGCAGCTCAAAGAATTCTAGTGATCAAAATCATTATAATTTCTATCTTCAAAACCCACAATCTCAAGAATGCTTCAACAATTTGTTCATGGAGGATGAAGATCATTTCTCTGCTTCCTCTTCTTCAAGTCACCACCACCACCACCAACTCCGACAGCTTCAATGTTCCACCACCACGACTAGTACTACATCCACTGGTGTTGTTGCTCCAGTTGATCAAGACCCAAACTTTGATCTTTCTGAAGAATGGGCTTCTACAATACTCCTCCAAACAGCCATTGCTATCGTCAACAATAACACTCCTCGAATCCAACACCTCATGTGGGTGTTGAATGAGCTTGGTTCTCCATACGGCGACATCGATCAAAAGCTAGCGTTCTACTTCCTTCAAGGCATGTTCAGTCGGGTCACCGACTCAGGCGCCAAGTGCTATGGAACCTTGGCAGCAGCATTGGAGAAACAGTCGTGTTTCGAGTCGATGAGAAGAATGGTGTTGAAGTTTGAGGAGGTGAGTCCATGGATGAGATTTGGCTATGTTGCTTCAAATGGCTCCTTAATGGAAGCTTTACAAGGTGAAAAGAAGTTGCATATAATTGATATTGCTGGAAGTTACTCCTCATTTTGCACTCAATGGCCAACTTTTATTGAAGCTTTGGCAACACAATCGGACCAAACTCCGCACCTTACTCTAACTACCTTGGTTGCAGCCAAATCGGAAGGAACCCTACGAGCTCATAAGAAGTTGATGAAGGAAATAAGTAGAAGACTAGAGAAGTTCGCAAGGCTTATGGGAATTCCCTTCAAATTCAAACCCATTTTCCACTATGGCGACGTTTCGCACTTCGATTTTACAAATTTACCCCTCAAACACGACGAGGCCGTCGCCGTCAACTGCTCCGGTGCCTTGCGCTCCGTCGCCCCCCTTCAAAACCGCCGCGATTTTCTCATATCGTTATTCCGATCATTGCGGCCCAAGATTATCACTGTCGTTGAGGAGGAAGCCGATCTCAACGCCCACGGCGGCGCCGACGACTTTGTCAAACACCTTCAGGAGTGTTTACGGTGGTTTAGGCTTTACTTCGATTCTTTGGACGGAAGTTTCCCGGTCGTCACTGACGAAAGGCTAATGCTTGAACGCGCAGCTGGACGCGCCGTCGTGGACTTGCTTGCACGCGGGCTGGCGGAATCGGTGGAGAGGCGTGAGACGGCGGCGCGTTGGGTCCGTCGTATGCATGACGGCGGTTTTAAACCGGTGTCGTTTAGTGAGGATGTAAATGATGATGTACGCGCGCTATTGAGGAGGTACAAGGATGGGTGGACAGTGATGGATGGCGACGGAGCTGGAGCCGGGATGTTCTTGGCTTGGAAGGGGCAGCCGGTGGTTTGGGCCGCCGCGTGGGTGCCTGGACAGGTAGACGGAGAGAAGACACCCGTGTGA 1512 48.54 MDTLLRLVNDRLESSDQYSYNNNSSSSSKNSSDQNHYNFYLQNPQSQECFNNLFMEDEDHFSASSSSSHHHHHQLRQLQCSTTTTSTTSTGVVAPVDQDPNFDLSEEWASTILLQTAIAIVNNNTPRIQHLMWVLNELGSPYGDIDQKLAFYFLQGMFSRVTDSGAKCYGTLAAALEKQSCFESMRRMVLKFEEVSPWMRFGYVASNGSLMEALQGEKKLHIIDIAGSYSSFCTQWPTFIEALATQSDQTPHLTLTTLVAAKSEGTLRAHKKLMKEISRRLEKFARLMGIPFKFKPIFHYGDVSHFDFTNLPLKHDEAVAVNCSGALRSVAPLQNRRDFLISLFRSLRPKIITVVEEEADLNAHGGADDFVKHLQECLRWFRLYFDSLDGSFPVVTDERLMLERAAGRAVVDLLARGLAESVERRETAARWVRRMHDGGFKPVSFSEDVNDDVRALLRRYKDGWTVMDGDGAGAGMFLAWKGQPVVWAAAWVPGQVDGEKTPV* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14029729 14033767 - CsaV3_2G016750.1 Csa02g01459 519516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01459 503 PANTHER PROTEIN SHORT-ROOT 1 492 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Csa02g01459 503 ProSiteProfiles GRAS family profile. 100 492 IPR005202 -
Csa02g01459 503 MobiDBLite consensus disorder prediction 15 37 - -
Csa02g01459 503 MobiDBLite consensus disorder prediction 61 80 - -
Csa02g01459 503 Pfam GRAS domain family 111 491 IPR005202 -
Csa02g01459 503 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 492 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01459 Csa-Chr2:14029729 Csa06g03022 Csa-Chr6:26029860 0 dispersed
Csa02g01459 Csa-Chr2:14029729 Csa06g00941 Csa-Chr6:7561913 2.57E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30936 PF03514 GRAS 4.20E-88 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01459 - - csv:101210294 967.992