Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa02g01465 | ATGGACGATATCGACATCCTCAAATCCACACTCTCCCAATCCGACATGTCGTCCACATTCTTCCCAAACAACACCGCCCCCAATTGCACTCCTCATGTACTCCCAATAATCCCACCCCCAGCTTATTTCTCCGACTACTCCCCGCCGCCCGGAACCTCCTTATTCCAAACCACCCCAACAATAATCCCCGAAACTCCTGCGCGGCAGAGGCGGAGCGGCGTAAGTGGGGGAGGAATGGCGGCGATGAGAGAGATGATATTTAGAATAGCGGCGATGCAGCCGGTGGAGATTGATCCGGAGGCGATAAAGGCGCCGAAGCGGCGGAATGTGAGAATATCGAAAGATCCACAGAGTGTGGCGGCGAGGCACCGGCGGGAAAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGCTGGTGCCGGGCGGGACGAAGATGGACACAGCGTCGATGCTGGATGAGGCGGTGCATTATGTGAAGTTTTTGAAACGGCAAGTCCAAACGCTGGAGCAGGCTGGGTTTAATTATAATAATAATAATAACAACAATAACAATTTTAATAATTTTGTTAATTCCGCGAATTTAAATTACGCTTCTGCCCTTTTCAAGGCTTGTCAAATAATGCCTGCTTCTTTGCAAATGCAGTCTTGA | 648 | 50.0 | MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPTIIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNNNNNNFNNFVNSANLNYASALFKACQIMPASLQMQS* | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 14091802 | 14092813 | - | CsaV3_2G016810.1 | Csa02g01465 | 519522 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa02g01465 | 215 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 116 | 171 | IPR036638 | GO:0046983 | |
Csa02g01465 | 215 | Pfam | Helix-loop-helix DNA-binding domain | 121 | 161 | IPR011598 | GO:0046983 | |
Csa02g01465 | 215 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 73 | 213 | IPR045843 | GO:0003700|GO:0006355 | |
Csa02g01465 | 215 | Gene3D | - | 111 | 187 | IPR036638 | GO:0046983 | |
Csa02g01465 | 215 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 112 | 161 | IPR011598 | GO:0046983 | |
Csa02g01465 | 215 | PANTHER | BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN | 73 | 213 | - | - | |
Csa02g01465 | 215 | Coils | Coil | 151 | 171 | - | - | |
Csa02g01465 | 215 | CDD | bHLH_AtIND_like | 113 | 169 | - | - | |
Csa02g01465 | 215 | SMART | finulus | 118 | 167 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g01465 | Csa-Chr2:14091802 | Csa06g02787 | Csa-Chr6:24304724 | 1.62E-46 | dispersed | |
Csa02g01465 | Csa-Chr2:14091802 | Csa04g02418 | Csa-Chr4:24394485 | 1.35E-45 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30937 | PF00010 | HLH | 8.20E-07 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa02g01465 | - | - | cmo:103497414 | 305.449 |