Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01465 ATGGACGATATCGACATCCTCAAATCCACACTCTCCCAATCCGACATGTCGTCCACATTCTTCCCAAACAACACCGCCCCCAATTGCACTCCTCATGTACTCCCAATAATCCCACCCCCAGCTTATTTCTCCGACTACTCCCCGCCGCCCGGAACCTCCTTATTCCAAACCACCCCAACAATAATCCCCGAAACTCCTGCGCGGCAGAGGCGGAGCGGCGTAAGTGGGGGAGGAATGGCGGCGATGAGAGAGATGATATTTAGAATAGCGGCGATGCAGCCGGTGGAGATTGATCCGGAGGCGATAAAGGCGCCGAAGCGGCGGAATGTGAGAATATCGAAAGATCCACAGAGTGTGGCGGCGAGGCACCGGCGGGAAAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGCTGGTGCCGGGCGGGACGAAGATGGACACAGCGTCGATGCTGGATGAGGCGGTGCATTATGTGAAGTTTTTGAAACGGCAAGTCCAAACGCTGGAGCAGGCTGGGTTTAATTATAATAATAATAATAACAACAATAACAATTTTAATAATTTTGTTAATTCCGCGAATTTAAATTACGCTTCTGCCCTTTTCAAGGCTTGTCAAATAATGCCTGCTTCTTTGCAAATGCAGTCTTGA 648 50.0 MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPTIIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNNNNNNFNNFVNSANLNYASALFKACQIMPASLQMQS* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14091802 14092813 - CsaV3_2G016810.1 Csa02g01465 519522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01465 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 171 IPR036638 GO:0046983
Csa02g01465 215 Pfam Helix-loop-helix DNA-binding domain 121 161 IPR011598 GO:0046983
Csa02g01465 215 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 73 213 IPR045843 GO:0003700|GO:0006355
Csa02g01465 215 Gene3D - 111 187 IPR036638 GO:0046983
Csa02g01465 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 161 IPR011598 GO:0046983
Csa02g01465 215 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 73 213 - -
Csa02g01465 215 Coils Coil 151 171 - -
Csa02g01465 215 CDD bHLH_AtIND_like 113 169 - -
Csa02g01465 215 SMART finulus 118 167 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01465 Csa-Chr2:14091802 Csa06g02787 Csa-Chr6:24304724 1.62E-46 dispersed
Csa02g01465 Csa-Chr2:14091802 Csa04g02418 Csa-Chr4:24394485 1.35E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30937 PF00010 HLH 8.20E-07 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01465 - - cmo:103497414 305.449