Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01490 ATGTCACAACAAGACTACCAACAAGCGGCGGCGGCGGCCGCTGCAGCAGCAGCGGCAGGTTTCTTCACGCCGTTTTCCAATGGCTTTGATAGATCTTCCACAACTCACCACCAAGACTCACATCAACATTACCAACACATAGCTCACCAGATCCGTAAAGAGAAGCTCCGCCTCCAAGGCAGTTACGACGCGCCGCCACATCCACCGTCCTTAGTCGGAATCGACGATGACGACGACAACGATGACCAATCCACTGTCCATCACGTTTATGACTCCACTGGAATTTTATCCGAAATGTTCAATTTTCCACCACCGCCGCCACCGCCACCCCCGCAGACTGATTGGTATAGTAACAGGCAAACAATCAACGCGGCGGATTCGGCTGTCGCCATGCAGCTTTTTCTAATGAACCCGAATCCTCGGTCGCCATCTCCGCCACCACCGCCACCACCGTCGTCAACACTCCACATGCTTCTTCCAAACCCTTCTTCAGGAGGGTCTTATGGGCAATTCACATGGGGGGTGGTGCCGCAGCAAGAAACAAATAATGACCATTCTTCATCAAACCCTAATGAAGGTCGTCTTTCATTGTCGTTGTCATCTTCTTTGGAAGCTGCAAAAGCTGAGGAATTGAGAATGGGTGACAGCAACAATGGGTTACTTTATCATCACCACCATCATCCTCATGTCGGAATTGGGTCCTCCAATCCATTGGGAGTTGTCAACTTATTGAGAAATTCAAAGTACATCAAAGCTGCTCAAGAATTATTAGAGGAATTTTGTAGCGTTGGAAGAGGTCAATTTAAGAAAAACAATCACAATAATAAATCAAATTTGCCCTCCAATTCTAATTCCCACGGTGGCGGTGGAGGCGATGGTGCCGGAGTTTCTTCATCTTCAACAAAGGATCATCAACCATCTTTGTCAGCAACTGATAGGATTGAACATCAAAGGAGAAAGGTCAAATTGTTATCTATGCTTGATGAGGTTGATAGAAGATACAATCATTATTGTGAGCAAATGCAAATGGTGGTGAATTCATTCGACGAGGTGATGGGATTCAGGGCAGCAGTGCCATACACGGCGTTGGCGCAAAAGGCAATGTCGAGGCATTTTCGGTGTTTAAAGGACGCAATATCATCACAGTTGAAGCATAGTTGCGAGATGTTGGGAGAGAAAGATGGGGGAGTAACTGGAAGAGCTTCAGGAATAACAAAAGGAGAGACTCCTAGACTTAAGCTCTTGGAGCAAAGCCTTAGACAACAACGAGCTTTCCATCAAATGGGTATTATGGAACAAGAAGCTTGGCGTCCTCAACGCGGCTTGCCTGAACGCTCTGTCAATATCTTACGAGCTTGGCTCTTCGAGCATTTCCTTCATCCGTATCCTAGTGATGCTGATAAGCATTTGTTAGCTAGACAGACTGGTTTGTCAAGAAATCAAGTATCAAATTGGTTCATTAATGCCAGGGTTCGTTTGTGGAAACCCATGGTAGAAGAAATGTACCAACAAGAAGCCAAAGATGATGACGACGACGATCATAATAATAACAACAATAATAGTAATAATAATAATAATAATAGCGATGATGAAGAAGAAGAAGAAGACACACAAACCAACAACAACCATCAACAAATAATGAATCCCCTTTCACAAACTCCAACGTTAACGCCGCAGCCGCAGGCACTTCCTCCATCCTCCTCGGCGGTGGCGCAGACGTTTCCGGCGAACAATTATGAGACAGAGCTGCAGGACACGTGTCGGAGAGTCAGCGTTCTGGCTGCACCTGATCTTCAATTCGGGACCACAAATGCAGCTGCCACGTCTGACATTGAAGGGCCCACAACGCTCATAAGGTTCGGGACCACCGCCGGTGACGTGTCACTCACATTAGGTTTACGCCACGCCGGAAACATCCCCGATCAAACCTCTCCCTTCGCCCTCAGATCGGAGTTTGGAGGCTGTTAA 1968 47.0 MSQQDYQQAAAAAAAAAAAGFFTPFSNGFDRSSTTHHQDSHQHYQHIAHQIRKEKLRLQGSYDAPPHPPSLVGIDDDDDNDDQSTVHHVYDSTGILSEMFNFPPPPPPPPPQTDWYSNRQTINAADSAVAMQLFLMNPNPRSPSPPPPPPPSSTLHMLLPNPSSGGSYGQFTWGVVPQQETNNDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSNNGLLYHHHHHPHVGIGSSNPLGVVNLLRNSKYIKAAQELLEEFCSVGRGQFKKNNHNNKSNLPSNSNSHGGGGGDGAGVSSSSTKDHQPSLSATDRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDEVMGFRAAVPYTALAQKAMSRHFRCLKDAISSQLKHSCEMLGEKDGGVTGRASGITKGETPRLKLLEQSLRQQRAFHQMGIMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKDDDDDDHNNNNNNSNNNNNNSDDEEEEEDTQTNNNHQQIMNPLSQTPTLTPQPQALPPSSSAVAQTFPANNYETELQDTCRRVSVLAAPDLQFGTTNAAATSDIEGPTTLIRFGTTAGDVSLTLGLRHAGNIPDQTSPFALRSEFGGC* 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14284494 14290654 - CsaV3_2G017060.1 Csa02g01490 519547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01490 655 MobiDBLite consensus disorder prediction 271 315 - -
Csa02g01490 655 SMART prehox3 238 381 IPR006563 -
Csa02g01490 655 MobiDBLite consensus disorder prediction 506 569 - -
Csa02g01490 655 ProSiteProfiles 'Homeobox' domain profile. 433 496 IPR001356 GO:0003677
Csa02g01490 655 MobiDBLite consensus disorder prediction 100 114 - -
Csa02g01490 655 MobiDBLite consensus disorder prediction 271 307 - -
Csa02g01490 655 Pfam Associated with HOX 244 380 IPR006563 -
Csa02g01490 655 CDD homeodomain 436 497 IPR001356 GO:0003677
Csa02g01490 655 Pfam Homeobox KN domain 453 492 IPR008422 GO:0003677|GO:0006355
Csa02g01490 655 Gene3D - 439 501 - -
Csa02g01490 655 MobiDBLite consensus disorder prediction 139 156 - -
Csa02g01490 655 MobiDBLite consensus disorder prediction 136 161 - -
Csa02g01490 655 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 75 642 - -
Csa02g01490 655 SMART HOX_1 436 500 IPR001356 GO:0003677
Csa02g01490 655 MobiDBLite consensus disorder prediction 60 117 - -
Csa02g01490 655 MobiDBLite consensus disorder prediction 540 569 - -
Csa02g01490 655 SUPERFAMILY Homeodomain-like 437 503 IPR009057 -
Csa02g01490 655 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 642 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01369 Csa-Chr1:9067362 Csa02g01490 Csa-Chr2:14284494 6.99E-72 dispersed
Csa02g01490 Csa-Chr2:14284494 Csa06g02874 Csa-Chr6:25012164 8.69E-165 dispersed
Csa02g01490 Csa-Chr2:14284494 Csa03g03494 Csa-Chr3:31283814 1.02E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30940 PF07526 POX 1.20E-52 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01490 - - csv:101212977 1092.8