Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa02g01532 | ATGTCGTCATCAAATTCACCATGTGCGGCTTGTAAATTCCTACGAAGAAAATGCACCCAAGAATGTGTATTCGCACCGTATTTCCCACCAGATCAGCCACAGAAATTTGCCAATGTCCACAAAGTCTTCGGCGCAAGCAACGTAGCCAAACTTCTAAACGAACTCAACGCTACACAACGTGAAGACGCCGTTAATTCCTTAGCCTACGAAGCCGAATTCCGTTTACGTGATCCCGTTTACGGTTGCGTTGGTTTAATCTCCGTTCTTCAACATAAACTCAAACAAATGCAAACCGATCTCTACAATGCTAAAAAAGAATTAGCTTCTTATATTGGTCCTCAAGCGATGCTTCCTATTCTCCAACCTCAAACCACTCCTTCCCCTTACAATCATCATCTCTCCCCTATGATGGGCATTGCTCCATCCCCTTCACCTTCCCCTTCCGTTCCCGGTTCCTCGCAACAAATGATTATTCGGGACTCCGCCGTTACCACTCCTGCTCATCATCATCATCATCATTTACAACAACAGCAACAACAATTGTTTGAGGCACAACAATTGGCGGCTGCGGTTGCGGCGAGAGAACAGGAAATGTTTAAAGCTTATGAACATAAGCAAAGCCAACAACAACAAAGGCAGCAAGAGCTATTGAGCTTTAACAACAACAACGTCAACAATCAAATGGGTGCTTCTAATTTGACATTGGGAACATTTGTGGATAATTCCTATCAACAAATTCAACAGCATGATCATCAAAATTCTTCATCACATCCACTACAAGTACAACTGTTTCTTCAACCACAACAAACACAGCAACAGCTTGAACAACAACATCATCATCATCATCAATCTCACAAGCCTGAATCTACTACACATGCTGATGATGGTAGGATTAATAACAACAATATTAACATCGGTCCATCTTGTTAG | 930 | 42.26 | MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPILQPQTTPSPYNHHLSPMMGIAPSPSPSPSVPGSSQQMIIRDSAVTTPAHHHHHHLQQQQQQLFEAQQLAAAVAAREQEMFKAYEHKQSQQQQRQQELLSFNNNNVNNQMGASNLTLGTFVDNSYQQIQQHDHQNSSSHPLQVQLFLQPQQTQQQLEQQHHHHHQSHKPESTTHADDGRINNNNINIGPSC* | 310 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 14567747 | 14569266 | + | CsaV3_2G017480.1 | Csa02g01532 | 519589 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa02g01532 | 309 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
| Csa02g01532 | 309 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - | |
| Csa02g01532 | 309 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 277 | - | - | |
| Csa02g01532 | 309 | MobiDBLite | consensus disorder prediction | 268 | 309 | - | - | |
| Csa02g01532 | 309 | Coils | Coil | 86 | 106 | - | - | |
| Csa02g01532 | 309 | MobiDBLite | consensus disorder prediction | 294 | 309 | - | - | |
| Csa02g01532 | 309 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 36-LIKE | 1 | 277 | - | - | |
| Csa02g01532 | 309 | MobiDBLite | consensus disorder prediction | 275 | 293 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa02g00714 | Csa-Chr2:5807886 | Csa02g01532 | Csa-Chr2:14567747 | 5.72E-60 | dispersed | |
| Csa02g01532 | Csa-Chr2:14567747 | Csa03g03970 | Csa-Chr3:34700634 | 2.82E-51 | dispersed | |
| Csa06g03827 | Csa-Chr6:30345815 | Csa02g01532 | Csa-Chr2:14567747 | 2.34E-40 | dispersed | |
| Csa02g01532 | Csa-Chr2:14567747 | Csa05g01896 | Csa-Chr5:22166489 | 3.35E-52 | transposed | |
| Csa02g01532 | Csa-Chr2:14567747 | Csa01g00123 | Csa-Chr1:692578 | 1.13E-51 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 30947 | PF03195 | LOB | 1.70E-41 | No_clan | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa02g01532 | - | - | csv:101215785 | 494.197 |