Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01532 ATGTCGTCATCAAATTCACCATGTGCGGCTTGTAAATTCCTACGAAGAAAATGCACCCAAGAATGTGTATTCGCACCGTATTTCCCACCAGATCAGCCACAGAAATTTGCCAATGTCCACAAAGTCTTCGGCGCAAGCAACGTAGCCAAACTTCTAAACGAACTCAACGCTACACAACGTGAAGACGCCGTTAATTCCTTAGCCTACGAAGCCGAATTCCGTTTACGTGATCCCGTTTACGGTTGCGTTGGTTTAATCTCCGTTCTTCAACATAAACTCAAACAAATGCAAACCGATCTCTACAATGCTAAAAAAGAATTAGCTTCTTATATTGGTCCTCAAGCGATGCTTCCTATTCTCCAACCTCAAACCACTCCTTCCCCTTACAATCATCATCTCTCCCCTATGATGGGCATTGCTCCATCCCCTTCACCTTCCCCTTCCGTTCCCGGTTCCTCGCAACAAATGATTATTCGGGACTCCGCCGTTACCACTCCTGCTCATCATCATCATCATCATTTACAACAACAGCAACAACAATTGTTTGAGGCACAACAATTGGCGGCTGCGGTTGCGGCGAGAGAACAGGAAATGTTTAAAGCTTATGAACATAAGCAAAGCCAACAACAACAAAGGCAGCAAGAGCTATTGAGCTTTAACAACAACAACGTCAACAATCAAATGGGTGCTTCTAATTTGACATTGGGAACATTTGTGGATAATTCCTATCAACAAATTCAACAGCATGATCATCAAAATTCTTCATCACATCCACTACAAGTACAACTGTTTCTTCAACCACAACAAACACAGCAACAGCTTGAACAACAACATCATCATCATCATCAATCTCACAAGCCTGAATCTACTACACATGCTGATGATGGTAGGATTAATAACAACAATATTAACATCGGTCCATCTTGTTAG 930 42.26 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPILQPQTTPSPYNHHLSPMMGIAPSPSPSPSVPGSSQQMIIRDSAVTTPAHHHHHHLQQQQQQLFEAQQLAAAVAAREQEMFKAYEHKQSQQQQRQQELLSFNNNNVNNQMGASNLTLGTFVDNSYQQIQQHDHQNSSSHPLQVQLFLQPQQTQQQLEQQHHHHHQSHKPESTTHADDGRINNNNINIGPSC* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14567747 14569266 + CsaV3_2G017480.1 Csa02g01532 519589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01532 309 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Csa02g01532 309 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Csa02g01532 309 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 277 - -
Csa02g01532 309 MobiDBLite consensus disorder prediction 268 309 - -
Csa02g01532 309 Coils Coil 86 106 - -
Csa02g01532 309 MobiDBLite consensus disorder prediction 294 309 - -
Csa02g01532 309 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 277 - -
Csa02g01532 309 MobiDBLite consensus disorder prediction 275 293 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01532 - - - csv:101215785 494.197
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00714 Csa-Chr2:5807886 Csa02g01532 Csa-Chr2:14567747 5.72E-60 dispersed
Csa02g01532 Csa-Chr2:14567747 Csa03g03970 Csa-Chr3:34700634 2.82E-51 dispersed
Csa06g03827 Csa-Chr6:30345815 Csa02g01532 Csa-Chr2:14567747 2.34E-40 dispersed
Csa02g01532 Csa-Chr2:14567747 Csa05g01896 Csa-Chr5:22166489 3.35E-52 transposed
Csa02g01532 Csa-Chr2:14567747 Csa01g00123 Csa-Chr1:692578 1.13E-51 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g00714 . 1 219 AS2 family AT1G65620 67.0 9.7e-70 260.0
Csa02g01532 . 2 110 AS2 family AT1G65620 81.7 6.1e-48 187.6
Csa01g00123 CCT,ECH 3 144 AS2 family AT1G65620 60.0 8.3e-45 177.2
Csa03g03970 CCT,ECH 3 113 AS2 family AT1G65620 70.3 2.0e-43 172.6
Csa05g01896 CCT,ECH 1 115 AS2 family AT1G65620 70.4 5.9e-43 171.0
Csa01g00875 CCT,ECH 1 116 AS2 family AT1G65620 69.0 4.7e-40 161.4
Csa02g01532 . 1 122 AS2 family AT5G66870 86.9 1.8e-57 219.9
Csa02g00714 . 4 138 AS2 family AT5G66870 68.4 1.7e-44 176.8
Csa01g00123 CCT,ECH 1 113 AS2 family AT5G66870 68.1 2.1e-39 159.8
Csa03g03970 CCT,ECH 7 113 AS2 family AT5G66870 68.2 2.8e-39 159.5
Csa05g01896 CCT,ECH 1 121 AS2 family AT5G66870 62.8 3.7e-39 159.1
Csa01g00875 CCT,ECH 12 128 AS2 family AT5G66870 66.1 1.8e-38 156.8
Csa02g01532 . 4 118 AS2 family AT2G23660 69.6 3.8e-44 175.6
Csa02g00714 . 6 112 AS2 family AT2G23660 69.2 7.3e-40 161.4
Csa01g00123 CCT,ECH 8 113 AS2 family AT2G23660 64.2 1.8e-38 156.8
Csa03g03970 CCT,ECH 7 123 AS2 family AT2G23660 58.1 2.0e-37 153.3
Csa01g00875 CCT,ECH 12 143 AS2 family AT2G23660 57.6 1.3e-36 150.6
Csa05g01896 CCT,ECH 4 114 AS2 family AT3G27650 87.4 2.7e-54 208.4
Csa03g03970 CCT,ECH 4 114 AS2 family AT3G27650 84.7 1.9e-52 202.2
Csa01g00123 CCT,ECH 4 114 AS2 family AT3G27650 78.4 1.9e-47 185.7
Csa01g00875 CCT,ECH 7 117 AS2 family AT3G27650 73.9 4.3e-44 174.5
Csa02g00714 . 3 112 AS2 family AT3G27650 68.2 6.9e-42 167.2
Csa02g01532 . 4 112 AS2 family AT3G27650 67.9 3.8e-40 161.4
Csa01g00123 CCT,ECH 3 167 AS2 family AT5G63090 70.1 6.1e-58 220.7
Csa03g03970 CCT,ECH 2 125 AS2 family AT5G63090 78.2 5.0e-52 201.1
Csa05g01896 CCT,ECH 1 113 AS2 family AT5G63090 85.1 2.1e-50 195.7
Csa01g00875 CCT,ECH 7 116 AS2 family AT5G63090 82.7 6.1e-50 194.1
Csa02g00714 . 3 112 AS2 family AT5G63090 74.5 2.0e-45 179.1
Csa02g01532 . 2 110 AS2 family AT5G63090 70.6 1.5e-40 162.9
Csa01g03551 . 14 125 AS2 family AT5G63090 64.3 4.1e-38 154.8
Csa05g00849 . 4 106 AS2 family AT5G63090 69.9 1.2e-37 153.3
Csa06g01169 CCT,ECH 14 117 AS2 family AT5G63090 67.3 1.2e-37 153.3
Csa05g00849 . 3 114 AS2 family AT2G30130 92.0 2.5e-54 208.8
Csa06g01395 . 2 138 AS2 family AT2G30130 68.6 1.6e-48 189.5
Csa01g03551 . 10 129 AS2 family AT2G30130 68.3 6.2e-45 177.6
Csa06g01169 CCT,ECH 10 125 AS2 family AT2G30130 72.4 6.2e-45 177.6
Csa07g01185 CCT 17 128 AS2 family AT2G30130 70.5 1.7e-42 169.5
Csa01g00123 CCT,ECH 8 129 AS2 family AT2G30130 61.5 1.1e-38 156.8
Csa05g00883 . 39 150 AS2 family AT2G30130 67.0 9.5e-38 153.7
Csa05g01777 . 14 126 AS2 family AT2G30130 63.7 2.1e-37 152.5
Csa02g00714 . 7 109 AS2 family AT2G30130 67.0 8.1e-37 150.6
Csa03g03970 CCT,ECH 8 111 AS2 family AT2G30130 65.4 1.1e-36 150.2
Csa01g03551 . 4 170 AS2 family AT1G31320 74.6 9.6e-66 246.5
Csa06g01169 CCT,ECH 1 171 AS2 family AT1G31320 72.6 5.5e-61 230.7
Csa07g01185 CCT 19 132 AS2 family AT1G31320 75.4 1.3e-46 183.0
Csa05g00849 . 2 132 AS2 family AT1G31320 66.2 2.1e-44 175.6
Csa06g01395 . 6 123 AS2 family AT1G31320 63.6 3.4e-39 158.3
Csa05g00883 . 48 160 AS2 family AT1G31320 63.7 6.5e-38 154.1
Csa01g01304 CCT,ECH 17 129 AS2 family AT1G31320 62.8 1.9e-37 152.5
Csa01g00123 CCT,ECH 9 120 AS2 family AT1G31320 62.5 7.2e-37 150.6
Csa01g01304 CCT,ECH 20 136 AS2 family AT2G28500 70.1 2.8e-44 175.6
Csa01g01305 . 36 209 AS2 family AT2G28500 52.7 6.3e-44 174.5
Csa05g00625 . 48 140 AS2 family AT2G28500 88.2 1.5e-42 169.9
Csa05g01777 . 11 129 AS2 family AT2G28500 68.1 7.6e-42 167.5
Csa06g01663 . 33 201 AS2 family AT2G28500 51.9 7.6e-42 167.5
Csa06g01395 . 6 134 AS2 family AT2G28500 54.3 5.7e-37 151.4
Csa05g00849 . 5 113 AS2 family AT2G28500 66.1 7.4e-37 151.0
Csa06g01169 CCT,ECH 13 120 AS2 family AT2G28500 67.6 7.4e-37 151.0
Csa05g00625 . 48 203 AS2 family AT1G07900 68.9 1.8e-44 176.0
Csa06g01663 . 33 200 AS2 family AT1G07900 63.7 3.9e-44 174.9
Csa01g01304 CCT,ECH 20 136 AS2 family AT1G07900 66.7 9.1e-41 163.7
Csa01g01305 . 31 154 AS2 family AT1G07900 65.3 1.2e-40 163.3
Csa05g01777 . 11 129 AS2 family AT1G07900 62.2 2.5e-38 155.6
Csa06g01169 CCT,ECH 6 171 AS2 family AT1G16530 57.1 1.9e-47 185.7
Csa01g03551 . 4 119 AS2 family AT1G16530 66.7 1.6e-41 166.0
Csa07g01185 CCT 21 127 AS2 family AT1G16530 67.6 2.8e-38 155.2
Csa05g00849 . 5 110 AS2 family AT1G16530 68.2 2.4e-37 152.1
Csa05g00883 . 1 160 AS2 family AT2G30340 68.3 8.8e-58 220.7
Csa06g00218 . 60 170 AS2 family AT2G30340 79.3 6.8e-50 194.5
Csa05g00883 . 32 157 AS2 family AT2G40470 86.5 5.9e-59 224.2
Csa06g00218 . 60 169 AS2 family AT2G40470 86.4 7.0e-52 200.7
Csa06g01169 CCT,ECH 11 121 AS2 family AT2G40470 65.8 3.6e-40 161.8
Csa07g01185 CCT 23 127 AS2 family AT2G40470 67.6 3.4e-38 155.2
Csa01g03551 . 15 125 AS2 family AT2G40470 63.1 1.3e-37 153.3
Csa06g00193 . 1 119 AS2 family AT3G11090 78.2 7.3e-47 183.7
Csa03g02257 . 1 95 AS2 family AT2G42440 84.2 5.6e-43 171.4
Csa07g01611 . 6 117 AS2 family AT2G42440 70.5 2.3e-41 166.0
Csa03g02259 . 81 188 AS2 family AT2G42440 69.4 8.3e-39 157.5
Csa06g00613 . 29 138 AS2 family AT2G42440 65.2 2.7e-37 152.5
Csa07g01611 . 1 125 AS2 family AT3G58190 74.8 7.9e-49 190.7
Csa03g02257 . 4 95 AS2 family AT3G58190 90.2 4.1e-45 178.3
Csa03g02259 . 81 192 AS2 family AT3G58190 68.8 2.1e-41 166.0
Csa06g00613 . 29 127 AS2 family AT3G58190 74.7 5.2e-40 161.4
Csa03g00963 CCT 18 135 AS2 family AT3G58190 61.9 9.1e-37 150.6
Csa03g03758 . 30 124 AS2 family AT3G58190 71.6 9.1e-37 150.6
Csa03g02257 . 1 172 AS2 family AT2G31310 54.3 8.4e-39 157.1
Csa03g02259 . 81 295 AS2 family AT2G42430 55.8 2.4e-54 209.1
Csa06g00613 . 16 131 AS2 family AT2G42430 69.0 6.8e-41 164.5
Csa03g02257 . 3 94 AS2 family AT2G42430 80.4 8.4e-39 157.5
Csa03g00963 CCT 16 126 AS2 family AT2G42430 65.8 2.4e-38 156.0
Csa03g03758 . 29 170 AS2 family AT2G42430 54.9 9.2e-38 154.1
Csa07g01611 . 1 113 AS2 family AT2G42430 65.0 3.5e-37 152.1
Csa06g00613 . 29 221 AS2 family AT4G00220 64.1 6.8e-59 224.2
Csa03g00963 CCT 24 190 AS2 family AT4G00220 54.2 2.0e-42 169.5
Csa06g00614 CCT 29 212 AS2 family AT4G00220 52.3 3.9e-38 155.2
Csa06g00613 . 29 241 AS2 family AT2G45420 69.2 6.1e-72 267.7
Csa03g00963 CCT 24 197 AS2 family AT2G45420 53.8 9.5e-49 190.7
Csa03g02259 . 82 184 AS2 family AT2G45420 77.7 1.7e-42 169.9
Csa03g03758 . 30 136 AS2 family AT2G45420 72.9 2.1e-40 162.9
Csa07g01611 . 11 117 AS2 family AT2G45420 69.2 4.7e-40 161.8
Csa03g02257 . 7 95 AS2 family AT2G45420 76.4 1.4e-36 150.2
Csa03g03758 . 30 143 AS2 family AT3G03760 83.3 3.8e-48 188.7
Csa06g00613 . 29 130 AS2 family AT3G03760 80.4 2.2e-40 162.9
Csa03g02259 . 81 195 AS2 family AT3G03760 67.8 6.0e-38 154.8
Csa06g00613 . 29 139 AS2 family AT4G00210 73.0 1.3e-43 173.3
Csa03g00963 CCT 16 127 AS2 family AT4G00210 64.3 2.3e-40 162.5
Csa07g01611 . 1 115 AS2 family AT4G00210 61.7 8.3e-38 154.1
Csa03g02259 . 82 184 AS2 family AT4G00210 66.0 1.2e-36 150.2
Csa06g00613 . 29 224 AS2 family AT2G45410 51.0 1.4e-46 183.0
Csa03g00963 CCT 11 143 AS2 family AT2G45410 60.4 4.8e-42 167.9
Csa03g02259 . 82 184 AS2 family AT2G45410 68.0 1.9e-38 156.0
Csa05g00729 . 7 156 AS2 family AT5G06080 57.3 3.7e-44 174.9
Csa07g02387 . 29 137 AS2 family AT3G13850 76.1 2.1e-43 172.9
Csa03g02065 . 63 224 AS2 family AT1G68510 65.3 6.9e-59 224.2
Csa01g00381 . 79 240 AS2 family AT1G68510 62.4 1.0e-54 210.3
Csa05g02614 . 1 136 AS2 family AT1G68510 65.5 3.8e-49 191.8
Csa06g03011 . 1 104 AS2 family AT1G68510 63.5 1.6e-39 159.8
Csa03g02065 . 63 360 AS2 family AT1G67100 51.0 6.0e-71 264.2
Csa01g00381 . 79 218 AS2 family AT1G67100 72.5 7.4e-61 230.7
Csa05g02614 . 1 132 AS2 family AT1G67100 67.1 5.3e-51 198.0
Csa06g03011 . 1 110 AS2 family AT1G67100 66.4 3.7e-44 175.3
Csa04g02468 . 1 110 AS2 family AT1G67100 60.9 3.0e-38 155.6
Csa03g02065 . 63 360 AS2 family AT3G02550 57.3 4.7e-80 294.7
Csa01g00381 . 79 245 AS2 family AT3G02550 68.2 1.4e-63 240.0
Csa05g02614 . 1 141 AS2 family AT3G02550 64.1 6.2e-48 188.0
Csa06g03011 . 1 136 AS2 family AT3G02550 54.4 1.4e-39 160.2
Csa06g03011 . 1 234 AS2 family AT5G67420 57.9 4.2e-70 261.5
Csa04g02468 . 1 127 AS2 family AT5G67420 64.4 1.1e-46 183.7
Csa03g02065 . 65 184 AS2 family AT5G67420 65.0 8.0e-45 177.6
Csa01g00381 . 81 190 AS2 family AT5G67420 61.8 2.0e-40 162.9
Csa05g02614 . 3 106 AS2 family AT5G67420 63.5 1.1e-38 157.1
Csa06g03011 . 1 234 AS2 family AT3G49940 60.1 2.9e-71 265.4
Csa03g02065 . 65 219 AS2 family AT3G49940 53.5 4.6e-45 178.3
Csa01g00381 . 81 190 AS2 family AT3G49940 62.7 1.5e-40 163.3
Csa05g02614 . 3 106 AS2 family AT3G49940 64.4 1.2e-37 153.7
Csa06g03011 . 1 234 AS2 family AT4G37540 57.3 6.4e-68 254.2
Csa03g02065 . 65 175 AS2 family AT4G37540 66.7 3.6e-42 168.7
Csa01g00381 . 81 191 AS2 family AT4G37540 63.1 4.3e-40 161.8
Csa05g02614 . 3 126 AS2 family AT4G37540 55.6 4.5e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001038 5 3 3 5 4 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 3 4 2 2 3 2 4 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30947 PF03195 LOB 1.70E-41 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01532 Csa_Chr02 FPKM 8.547392 10.131478 10.918728 10.427261 14.681259 14.995369 16.860825 13.119929 13.426488 13.108097