Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01545 ATGGTTTCTTCAAACCCCATCTCTCTTCTCACATTTCTCACTCTCCTCTTCCTCCTCTCTCCCTCGTCCTCGGCCGCCCCAACGGCGGACATTTGCCAATCCACTACCTCCCCACCCTTCTGCAACTCCTTCCTTCCTAAGTCTCCAGACTCCATCCACTCTCATTGTCGCTTCACTCTTCACCAAGCCCTCGCCCATGCACGAACCTTCCTGTCACTCGTCAACGCCCAACTCAACCTCTTACCCTCCCTCTCTGCCCTCCACGATTGTCGTTGCCTGGCGGAAGCCAACCTCGACTTCTTATTCCAAACTTTCTCCATAGTCAACTCCACTACCACGACGCTTCCCTATTACGATGCCCACGAGATGTTATCTTTGATAAGCGCAATTATCACTAACGTAGACACTTGTTATGAAGGGTTGGCGAGTTTAAACTCAGCCGTGGGCTTGGTTGATAAGGTGTTGGAAGCTATCTCTTTTGATAAGAAGCTATATAGTCTGTACCTGTCACTGTTCAAAATGGGTTGGGTTTCTAAGGACTTGAAGGCTCCTACGTTCCCAAAAATGAACCATTTTGGGGCTGGGAAAGGGCAGTTGAAGCTTAAAATGTCGCCCAAAGACCGTGCTTATTATGAGCGCTTGGTCCATAGGAACAAGCCGCCGGGTGCTAGAAGGCTTCTTCAAACCAATTACCAAGATGATGGAATTGTGGTCAATGGCATTGTTGGTGTGGATCAAAATGGAATGTACGACTTCACAAATATCACAGCCGCCATTGCTGCAGCTCCCAACAAGACCACCGTCGCTAAGGGATACTTCTTGATCTTCGTCGCCGCTGGCATTTACAACGAGACCGTTTTGGTTCCTAAAGAAAAAAGATACGTTCTGTTGATCGGAGAAGGTAACAACCAAACCATCATCACCGGCAACAAAAACGTCGTTGATGGCTCAACCACTTTCAATAGCGCAACAGTTGCTGTGGAGGGAACGGGGTTCTTGGGGGTGAACCTAACGATCACCAACACAGCTGGATCTGCCAAACATCAAGCAGTTGCGCTGCGAGTGAGCGCCGACAACGTGACGTTATACAACTGCATATTCGAAGGCTATCAAGACACCCTCTACACGCACTCCCTCCGTCAATTCTATAGAGAATGTGACGTCTACGGTACCGTCGATTTCATCTTCGGTAACGCTGCCGTCGTTTTACAAAACTGTAACATCTACGCCCGCCTCCCGATGAGTGGCCAGTTCAACGCCCTCACAGCGCAAGGCCGAACCGACCCTAATCAAAACACGGGAACCTCGATCCACAATTGCACCATCAAGGCGACGCCAGAGCTCGCGGCAAGCCCGGCCACGAAGAGCTACTTAGGGCGGCCGTGGAAGCAATATTCTCGAACAGTTTATATGCAATCATTTATTGATTCTTTTATTGATCCTGTAGGGTGGAAGGAGTGGGACGGCACTTTGAATTTGAACACTTCTTATTATGCTGAGTTTAATAACTCCGGGCCGGGCTGCGACACTTCACAGCGGGCTTCGTGGGCGGTTGGTGTCATTAACGCCACCGTTGCTAGTAACTTCACGGTGTCTCAATTATTGGCCGGAGATAAATGGCTGCCGCCCACCGAGGTGCCTTACACCGGTGGTTTGATATCATAA 1665 49.79 MVSSNPISLLTFLTLLFLLSPSSSAAPTADICQSTTSPPFCNSFLPKSPDSIHSHCRFTLHQALAHARTFLSLVNAQLNLLPSLSALHDCRCLAEANLDFLFQTFSIVNSTTTTLPYYDAHEMLSLISAIITNVDTCYEGLASLNSAVGLVDKVLEAISFDKKLYSLYLSLFKMGWVSKDLKAPTFPKMNHFGAGKGQLKLKMSPKDRAYYERLVHRNKPPGARRLLQTNYQDDGIVVNGIVGVDQNGMYDFTNITAAIAAAPNKTTVAKGYFLIFVAAGIYNETVLVPKEKRYVLLIGEGNNQTIITGNKNVVDGSTTFNSATVAVEGTGFLGVNLTITNTAGSAKHQAVALRVSADNVTLYNCIFEGYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVLQNCNIYARLPMSGQFNALTAQGRTDPNQNTGTSIHNCTIKATPELAASPATKSYLGRPWKQYSRTVYMQSFIDSFIDPVGWKEWDGTLNLNTSYYAEFNNSGPGCDTSQRASWAVGVINATVASNFTVSQLLAGDKWLPPTEVPYTGGLIS* 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14628980 14631634 - CsaV3_2G017610.1 Csa02g01545 519602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01545 554 Pfam Plant invertase/pectin methylesterase inhibitor 30 144 IPR006501 GO:0004857
Csa02g01545 554 Gene3D - 238 552 IPR012334 -
Csa02g01545 554 CDD PMEI-like_3 31 176 - -
Csa02g01545 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 174 IPR035513 -
Csa02g01545 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 174 IPR035513 -
Csa02g01545 554 PANTHER PECTINESTERASE 22 552 - -
Csa02g01545 554 PANTHER PECTINESTERASE 22 552 - -
Csa02g01545 554 Pfam Pectinesterase 244 538 IPR000070 GO:0030599|GO:0042545
Csa02g01545 554 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Csa02g01545 554 SMART PMEI_2 22 171 IPR006501 GO:0004857
Csa02g01545 554 SUPERFAMILY Pectin lyase-like 237 551 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01545 Csa-Chr2:14628980 Csa07g01870 Csa-Chr7:18722250 0 dispersed
Csa02g01545 Csa-Chr2:14628980 Csa05g02685 Csa-Chr5:27748797 1.96E-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01545 K01051 - csv:101216984 1082.78