Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01560 ATGGGTTCAAAATCCCAAGTTATGTTGAACCCACAAGCTTTGTTGGAAGATCATCAAGAAGTGACACCAAATTCTCAAATGGGTTTCTTCAATTTCCCTTCAAATTTAACCTTTTTTCAACTTCCTTCAATCCCTCAAACCCATTCTCCTTCACCTTCATTTGATCCTCCAAATTTCTCCACTTCCAATAACAATACCAATAATAATAATAATTCCAATAATCTTTCAGAAACCCTACTTTCTTCTTCTATTTTGCCTCTCAAATCCTCCATTTCCTATGAACTTGCACCCCAACATCTTCTTTCCTTGCAAACATCCACTCCAAATCTATGGCCATGGGGAGAAATTGGAGAAAGGTTATTGATGAATGGGAAGAGATCAAATAATAATGAGAATTATAATAATCAATTGGGAGTATCAAAAATGAAGATGAAGAAAATGAAAGGAAGAAGAAAAGTGAGAGAACCAAGATTCTCATTCAAGACCATGAGCGATGTTGATGTTCTTGATGATGGTTACAAATGGAGAAAATATGGACAGAAAGTGGTAAAAAACACACAACATCCCAGAAGTTATTATCGTTGTACACAAGATCATTGTAGGGTTAAGAAAAGAGTAGAGAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGCAGACATGTTCATTCTCCTTCCCATGATTCTGAAGATTCTGAAGCTCAAACCCATCTCAATAATTTCTTTTGGTAA 741 35.63 MGSKSQVMLNPQALLEDHQEVTPNSQMGFFNFPSNLTFFQLPSIPQTHSPSPSFDPPNFSTSNNNTNNNNNSNNLSETLLSSSILPLKSSISYELAPQHLLSLQTSTPNLWPWGEIGERLLMNGKRSNNNENYNNQLGVSKMKMKKMKGRRKVREPRFSFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQTHLNNFFW* 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14764150 14767009 + CsaV3_2G017760.1 Csa02g01560 519617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01560 246 SUPERFAMILY WRKY DNA-binding domain 161 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa02g01560 246 Gene3D WRKY domain 156 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa02g01560 246 SMART WRKY_cls 169 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa02g01560 246 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 52 240 IPR044810 GO:0003700
Csa02g01560 246 MobiDBLite consensus disorder prediction 43 74 - -
Csa02g01560 246 ProSiteProfiles WRKY domain profile. 164 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa02g01560 246 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 52 240 - -
Csa02g01560 246 Pfam WRKY DNA -binding domain 170 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa02g01560 Csa06g02834 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01560 Csa-Chr2:14764150 Csa03g01529 Csa-Chr3:11362956 2.50E-34 dispersed
Csa03g00716 Csa-Chr3:6430612 Csa02g01560 Csa-Chr2:14764150 5.92E-46 transposed
Csa02g01560 Csa-Chr2:14764150 Csa06g02834 Csa-Chr6:24728797 2.24E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30949 PF03106 WRKY 4.20E-24 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01560 - - cmo:103497483 423.705