Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01587 ATGATCATTATGAAATATATGAAGATGGATGAGCATAGAATAGCTTTCATGGCTGTGATTTTAATTCAAGCCATTTACGCTGGTATGTTTCTCGTCTCCAAGGCGGCTTTCGACGTTGGAATGAACAGCTATGTCTTCGTTTTCTATCGTCAAGCCTTCGCTACTGTCTTCCTTTCTCCAATAGCCTTCTTTTTTCAATGGAAAGATGCCCCACCCTTGACATTCTTCACCTTCTGCAAGATTTTTATGCTCTCTTTATTTGGGATAGCCCTATGTTTAAATCTTTATGGGATTGCTCTAGTGTACACATCAGCAACATTGGCTGCAGCAACTACAAATTCTCTTCCTGTCACCACCTTCTTTGTTGCCCTCTTACTTAGGATGGAGGTATTGAGGTTGAAGTCAATAGCAGGAATTGGAAAGTTAGCAGGAATATTATTTTGCATTGGTGGTGTTGGAGTTTTGGCATTTTACAAAGGGCCCCAGTTGAATTTTTTCAACCATCATCATCTCTTTTCCGTCCATAACCCTAATCACCATTCTTCTTCGGTTGCATTACCCAATACTTGGTTGAAGGGTTGCTTTTTGATGCTATCTGCCAATACCTTATGGGGTATTTGGATTGTTCTTCAGGCCTTTGTATTGAAAAGCTATCCTTCAAAGCTTATGTTGACAAATCTTCAGTGTTTATTAAGTTCATTTCAATCCTTTGCTATTGCTATTGCAATGGAAAGAGACCCTCAGCAATGGAAACTTGGCTGGAATCTTAGGCTTCTCTCAGTGGCATATTGTGGAATCGTGGTGACCGCGGTTACCTACTGTCTTCAAGCTTGGGTTATTGAGAAGAAAGGACCAGTTTATCTAGCCATGTCTACACCTATTGCTCTTGTCATTACAATCTTCTTCTCTGCTGTTTTTCTTGGAGAGAGTATCAGTCTTGGAAGTATCTTAGGAGGATTGTTATTGGTGGGAGGGTTGTATTTTGTGCTATGGGGAAAGAGCAAAGAGCAAAAAATAAGTGAAGGATTGAAAGAAGGTACCAAAGAATGCGACGACATGGAAGAAGGGAAAGATAGCACTAAACTACCCAATGAAAATCCAACATCTTCTGTGGAAAATGTTTGA 1125 40.09 MIIMKYMKMDEHRIAFMAVILIQAIYAGMFLVSKAAFDVGMNSYVFVFYRQAFATVFLSPIAFFFQWKDAPPLTFFTFCKIFMLSLFGIALCLNLYGIALVYTSATLAAATTNSLPVTTFFVALLLRMEVLRLKSIAGIGKLAGILFCIGGVGVLAFYKGPQLNFFNHHHLFSVHNPNHHSSSVALPNTWLKGCFLMLSANTLWGIWIVLQAFVLKSYPSKLMLTNLQCLLSSFQSFAIAIAMERDPQQWKLGWNLRLLSVAYCGIVVTAVTYCLQAWVIEKKGPVYLAMSTPIALVITIFFSAVFLGESISLGSILGGLLLVGGLYFVLWGKSKEQKISEGLKEGTKECDDMEEGKDSTKLPNENPTSSVENV* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15034798 15041378 + CsaV3_2G018030.1 Csa02g01587 519644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01587 374 MobiDBLite consensus disorder prediction 342 361 - -
Csa02g01587 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 158 - -
Csa02g01587 374 PANTHER WAT1-RELATED PROTEIN 17 340 IPR030184 GO:0016021|GO:0022857
Csa02g01587 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 335 - -
Csa02g01587 374 Pfam EamA-like transporter family 17 140 IPR000620 GO:0016020|GO:0016021
Csa02g01587 374 Pfam EamA-like transporter family 192 330 IPR000620 GO:0016020|GO:0016021
Csa02g01587 374 MobiDBLite consensus disorder prediction 342 374 - -
Csa02g01587 374 PANTHER WAT1-RELATED PROTEIN 17 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01587 - - - csv:101203024 699.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01587 Csa-Chr2:15034798 Csa06g02809 Csa-Chr6:24496090 3.11E-114 dispersed
Csa06g02811 Csa-Chr6:24526657 Csa02g01587 Csa-Chr2:15034798 2.18E-64 dispersed
Csa02g01587 Csa-Chr2:15034798 Csa02g01588 Csa-Chr2:15044269 7.20E-142 tandem
Csa06g00524 Csa-Chr6:4426866 Csa02g01587 Csa-Chr2:15034798 1.78E-93 transposed
Csa02g01587 Csa-Chr2:15034798 Csa06g02805 Csa-Chr6:24461196 1.51E-98 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa04g00717 . 1 757 Nodulin-like Gene Family AT4G19180 61.1 1.2e-250 862.8
Csa04g01773 . 24 283 Nodulin-like Gene Family AT3G45870 70.4 4.8e-99 357.8
Csa05g02916 CCT,ECH 12 378 Nodulin-like Gene Family AT3G28050 60.6 4.2e-119 424.9
Csa05g02916 CCT,ECH 127 335 Nodulin-like Gene Family AT3G28080 51.4 4.0e-51 198.4
Csa03g00265 . 1 341 Nodulin-like Gene Family AT5G47470 59.5 1.0e-104 377.1
Csa05g00425 . 11 342 Nodulin-like Gene Family AT5G47470 58.0 3.5e-100 362.1
Csa05g02916 CCT,ECH 10 335 Nodulin-like Gene Family AT5G40230 55.9 7.3e-95 344.4
Csa03g03910 CCT,ECH 1 355 Nodulin-like Gene Family AT5G40230 50.8 9.2e-90 327.4
Csa03g03909 . 1 346 Nodulin-like Gene Family AT5G40230 51.3 7.3e-87 317.8
Csa03g03911 CCT,ECH 4 334 Nodulin-like Gene Family AT5G40230 51.1 1.1e-85 313.9
Csa05g02916 CCT,ECH 12 335 Nodulin-like Gene Family AT5G40240 55.6 8.8e-93 337.4
Csa03g03910 CCT,ECH 1 355 Nodulin-like Gene Family AT5G40240 51.9 3.5e-89 325.5
Csa03g03909 . 1 348 Nodulin-like Gene Family AT5G40240 51.6 1.6e-86 316.6
Csa03g03911 CCT,ECH 8 334 Nodulin-like Gene Family AT5G40240 51.2 6.8e-85 311.2
Csa03g04250 CCT,ECH 19 276 Nodulin-like Gene Family AT3G53210 62.4 1.7e-85 312.8
Csa02g02098 CCT,ECH 16 283 Nodulin-like Gene Family AT3G53210 57.5 3.1e-84 308.5
Csa01g00409 . 9 260 Nodulin-like Gene Family AT3G53210 50.4 5.8e-70 261.2
Csa04g01463 . 99 341 Nodulin-like Gene Family AT2G37450 63.8 7.0e-84 307.4
Csa05g00696 . 59 292 Nodulin-like Gene Family AT2G37450 52.3 6.4e-61 231.1
Csa05g01817 . 99 332 Nodulin-like Gene Family AT2G37450 51.5 1.9e-60 229.6
Csa04g01463 . 12 360 Nodulin-like Gene Family AT2G37460 65.4 4.1e-125 444.9
Csa05g00698 . 8 335 Nodulin-like Gene Family AT2G37460 54.6 1.2e-95 347.1
Csa04g01808 . 15 352 Nodulin-like Gene Family AT2G37460 52.2 1.5e-95 346.7
Csa05g01817 . 1 332 Nodulin-like Gene Family AT2G37460 55.1 1.1e-93 340.5
Csa05g01814 . 8 343 Nodulin-like Gene Family AT2G37460 50.7 1.2e-92 337.0
Csa04g01903 CCT 13 344 Nodulin-like Gene Family AT2G37460 50.8 1.8e-88 323.2
Csa03g03689 . 12 339 Nodulin-like Gene Family AT2G37460 51.7 1.1e-85 313.9
Csa05g00696 . 60 267 Nodulin-like Gene Family AT2G37460 55.8 2.1e-60 229.9
Csa02g02098 CCT,ECH 1 397 Nodulin-like Gene Family AT1G75500 71.6 2.0e-159 558.9
Csa03g04250 CCT,ECH 19 392 Nodulin-like Gene Family AT1G75500 74.3 1.1e-149 526.6
Csa01g00409 . 9 340 Nodulin-like Gene Family AT1G75500 61.2 1.5e-114 409.8
Csa05g02357 CCT,ECH 12 367 Nodulin-like Gene Family AT1G60050 52.8 1.6e-97 353.2
Csa04g01463 . 12 333 Nodulin-like Gene Family AT5G13670 52.9 2.9e-91 332.4
Csa04g01463 . 13 373 Nodulin-like Gene Family AT2G39510 57.7 2.4e-114 409.1
Csa05g00698 . 8 349 Nodulin-like Gene Family AT2G39510 59.4 5.4e-114 407.9
Csa05g01814 . 8 331 Nodulin-like Gene Family AT2G39510 57.5 2.4e-109 392.5
Csa05g01817 . 12 333 Nodulin-like Gene Family AT2G39510 60.9 2.9e-107 385.6
Csa04g01808 . 18 370 Nodulin-like Gene Family AT2G39510 54.2 2.6e-100 362.5
Csa03g03689 . 16 337 Nodulin-like Gene Family AT2G39510 52.9 7.1e-90 327.8
Csa04g01903 CCT 16 342 Nodulin-like Gene Family AT2G39510 50.6 6.0e-89 324.7
Csa05g00696 . 59 268 Nodulin-like Gene Family AT2G39510 59.0 6.5e-67 251.5
Csa05g02916 CCT,ECH 12 335 Nodulin-like Gene Family AT4G15540 50.9 7.6e-86 314.3
Csa03g03910 CCT,ECH 1 335 Nodulin-like Gene Family AT4G15540 50.1 2.2e-85 312.8
Csa02g01181 . 20 277 Nodulin-like Gene Family AT4G08290 63.0 8.6e-88 320.5
Csa04g01808 . 14 265 Nodulin-like Gene Family AT4G08290 52.6 1.3e-72 270.0
Csa04g01808 . 12 357 Nodulin-like Gene Family AT4G08300 65.5 5.8e-124 441.0
Csa02g01587 . 11 264 Nodulin-like Gene Family AT5G64700 60.4 2.9e-77 285.4
Csa06g02809 . 1 255 Nodulin-like Gene Family AT5G64700 51.7 4.0e-63 238.4
Csa02g00579 CCT 1 368 Nodulin-like Gene Family AT4G30420 54.0 1.8e-104 376.3
Csa05g02138 . 10 401 Nodulin-like Gene Family AT5G07050 64.3 4.4e-138 488.0
Csa03g03689 . 10 381 Nodulin-like Gene Family AT5G07050 61.4 2.1e-124 442.6
Csa04g01903 CCT 6 342 Nodulin-like Gene Family AT5G07050 63.9 8.4e-121 430.6
Csa03g03691 CCT 8 385 Nodulin-like Gene Family AT5G07050 52.3 5.3e-107 384.8
Csa03g03692 . 8 337 Nodulin-like Gene Family AT5G07050 57.8 5.8e-106 381.3
Csa04g01463 . 11 343 Nodulin-like Gene Family AT5G07050 52.8 5.5e-96 348.2
Csa04g01808 . 18 338 Nodulin-like Gene Family AT5G07050 51.8 3.3e-93 339.0
Csa04g01903 CCT 13 358 Nodulin-like Gene Family AT3G56620 56.9 3.0e-104 375.6
Csa03g03689 . 12 343 Nodulin-like Gene Family AT3G56620 53.4 5.9e-100 361.3
Csa05g02138 . 15 357 Nodulin-like Gene Family AT3G56620 53.4 1.3e-94 343.6
Csa03g03692 . 10 352 Nodulin-like Gene Family AT3G56620 50.3 7.7e-92 334.3
Csa05g02357 CCT,ECH 12 375 Nodulin-like Gene Family AT1G70260 54.0 1.5e-103 373.2
Csa01g01566 . 11 327 Nodulin-like Gene Family AT1G09380 61.0 1.1e-106 383.6
Csa02g00519 . 1 302 Nodulin-like Gene Family AT1G09380 58.9 7.3e-103 370.9
Csa04g01903 CCT 13 358 Nodulin-like Gene Family AT2G40900 59.2 6.8e-107 384.4
Csa03g03689 . 12 367 Nodulin-like Gene Family AT2G40900 53.9 1.8e-104 376.3
Csa05g02138 . 15 366 Nodulin-like Gene Family AT2G40900 53.1 4.4e-98 355.1
Csa03g03691 CCT 10 344 Nodulin-like Gene Family AT2G40900 51.0 1.3e-94 343.6
Csa03g03692 . 10 344 Nodulin-like Gene Family AT2G40900 50.7 1.1e-93 340.5
Csa01g00409 . 1 339 Nodulin-like Gene Family AT3G18200 69.3 3.7e-126 448.4
Csa02g02098 CCT,ECH 16 363 Nodulin-like Gene Family AT3G18200 56.9 2.3e-107 386.0
Csa03g04250 CCT,ECH 19 356 Nodulin-like Gene Family AT3G18200 54.7 5.9e-100 361.3
Csa04g01808 . 12 362 Nodulin-like Gene Family AT1G44800 63.8 6.7e-125 444.1
Csa02g01181 . 27 349 Nodulin-like Gene Family AT1G44800 51.1 5.2e-93 338.2
Csa04g01773 . 108 361 Nodulin-like Gene Family AT5G45370 70.5 4.8e-99 357.8
Csa04g01808 . 12 315 Nodulin-like Gene Family AT1G21890 64.4 4.3e-113 404.8
Csa02g01181 . 26 327 Nodulin-like Gene Family AT1G21890 50.8 9.6e-89 323.9
Csa03g03689 . 12 315 Nodulin-like Gene Family AT1G21890 51.8 1.7e-85 313.2
Csa04g01903 CCT 5 321 Nodulin-like Gene Family AT1G21890 53.1 9.3e-84 307.4
Csa04g01463 . 11 313 Nodulin-like Gene Family AT1G21890 51.3 1.1e-81 300.4
Csa05g00698 . 8 314 Nodulin-like Gene Family AT1G21890 50.5 3.8e-77 285.4
Csa04g00183 . 1 566 Nodulin-like Gene Family AT1G80530 58.7 8.8e-185 643.7
Csa04g00699 . 1 416 Nodulin-like Gene Family AT4G19450 67.1 1.0e-150 530.0
Csa06g00642 . 45 443 Nodulin-like Gene Family AT4G19450 56.8 6.2e-127 451.1
Csa01g00205 . 5 532 Nodulin-like Gene Family AT1G74780 58.4 1.6e-175 612.8
Csa01g00202 . 10 527 Nodulin-like Gene Family AT1G74780 57.5 3.8e-169 591.7
Csa02g01375 CCT 9 538 Nodulin-like Gene Family AT4G34950 69.2 6.7e-217 750.4
Csa07g00091 CCT 10 515 Nodulin-like Gene Family AT4G34950 65.3 8.0e-202 700.3
Csa02g02588 . 6 592 Nodulin-like Gene Family AT5G14120 68.8 1.7e-231 798.9
Csa02g01375 CCT 1 384 Nodulin-like Gene Family AT2G16660 66.8 5.8e-143 504.2
Csa07g00091 CCT 4 368 Nodulin-like Gene Family AT2G16660 65.7 2.5e-138 488.8
Csa05g02780 . 14 564 Nodulin-like Gene Family AT2G39210 70.9 1.9e-222 768.8
Csa05g02776 . 14 576 Nodulin-like Gene Family AT2G39210 66.7 3.5e-216 748.0
Csa05g02779 . 14 564 Nodulin-like Gene Family AT2G39210 69.1 1.1e-214 743.0
Csa05g02777 . 14 576 Nodulin-like Gene Family AT2G39210 66.0 4.8e-213 737.6
Csa02g01686 . 31 583 Nodulin-like Gene Family AT2G39210 64.6 3.0e-207 718.4
Csa05g02778 . 13 576 Nodulin-like Gene Family AT2G39210 62.8 2.2e-205 712.2
Csa05g02773 . 3 560 Nodulin-like Gene Family AT2G39210 63.4 8.5e-202 700.3
Csa03g03306 . 17 579 Nodulin-like Gene Family AT2G39210 60.7 1.1e-193 673.3
Csa01g01332 . 22 578 Nodulin-like Gene Family AT2G39210 58.0 1.7e-186 649.4
Csa06g02620 . 26 580 Nodulin-like Gene Family AT2G39210 56.7 5.5e-177 617.8
Csa04g02020 . 15 539 Nodulin-like Gene Family AT2G39210 51.8 1.9e-153 539.7
Csa03g03303 . 11 473 Nodulin-like Gene Family AT2G39210 56.6 1.2e-152 537.0
Csa05g02774 . 1 175 Nodulin-like Gene Family AT2G39210 69.1 3.5e-62 236.5
Csa05g02775 . 15 173 Nodulin-like Gene Family AT2G39210 53.1 1.1e-52 204.9
Csa02g01677 . 1 112 Nodulin-like Gene Family AT2G39210 71.4 3.3e-44 176.8
Csa04g00699 . 6 564 Nodulin-like Gene Family AT3G01630 52.4 2.1e-149 526.2
Csa02g02588 . 6 429 Nodulin-like Gene Family AT3G01930 69.2 4.2e-166 581.3
Csa01g00205 . 4 541 Nodulin-like Gene Family AT1G18940 54.0 2.5e-165 578.9
Csa01g00202 . 7 520 Nodulin-like Gene Family AT1G18940 53.4 5.8e-154 541.2
Csa01g00205 . 5 539 Nodulin-like Gene Family AT2G34350 55.1 1.2e-159 560.1
Csa01g00202 . 11 525 Nodulin-like Gene Family AT2G34350 54.7 2.0e-151 532.7
Csa01g01332 . 16 581 Nodulin-like Gene Family AT2G28120 69.8 1.3e-223 772.7
Csa05g02780 . 9 561 Nodulin-like Gene Family AT2G28120 61.0 7.6e-192 667.2
Csa05g02777 . 12 557 Nodulin-like Gene Family AT2G28120 58.7 2.4e-185 645.6
Csa02g01686 . 29 583 Nodulin-like Gene Family AT2G28120 58.9 2.9e-183 638.6
Csa05g02776 . 17 557 Nodulin-like Gene Family AT2G28120 59.1 2.9e-183 638.6
Csa05g02779 . 8 561 Nodulin-like Gene Family AT2G28120 58.0 2.9e-183 638.6
Csa05g02778 . 8 559 Nodulin-like Gene Family AT2G28120 57.4 7.2e-182 634.0
Csa03g03306 . 14 565 Nodulin-like Gene Family AT2G28120 59.5 8.7e-180 627.1
Csa05g02773 . 1 563 Nodulin-like Gene Family AT2G28120 56.7 7.7e-176 614.0
Csa01g01316 . 13 569 Nodulin-like Gene Family AT2G28120 55.8 6.1e-173 604.4
Csa06g02620 . 24 589 Nodulin-like Gene Family AT2G28120 54.3 3.2e-166 582.0
Csa01g01325 . 3 577 Nodulin-like Gene Family AT2G28120 52.1 7.4e-163 570.9
Csa04g02020 . 12 557 Nodulin-like Gene Family AT2G28120 51.3 9.1e-153 537.3
Csa03g03303 . 15 464 Nodulin-like Gene Family AT2G28120 55.1 6.3e-138 488.0
Csa01g01323 . 1 234 Nodulin-like Gene Family AT2G28120 51.9 1.1e-62 238.0
Csa05g02774 . 1 174 Nodulin-like Gene Family AT2G28120 59.2 5.7e-54 209.1
Csa02g01677 . 1 113 Nodulin-like Gene Family AT2G28120 72.6 1.6e-40 164.5
Csa04g00699 . 1 569 Nodulin-like Gene Family AT1G31470 56.5 9.2e-169 590.5
Csa06g00642 . 43 452 Nodulin-like Gene Family AT1G31470 53.3 2.5e-110 396.4
Csa01g01661 . 33 214 Nodulin-like Gene Family AT1G76800 70.3 6.2e-61 230.7
Csa06g00530 . 33 214 Nodulin-like Gene Family AT1G76800 70.3 6.2e-61 230.7
Csa06g02351 . 1 197 Nodulin-like Gene Family AT1G76800 60.4 4.5e-59 224.6
Csa07g01425 . 28 189 Nodulin-like Gene Family AT1G76800 74.7 1.9e-57 219.2
Csa06g02351 . 3 196 Nodulin-like Gene Family AT3G25190 66.8 2.0e-63 239.2
Csa01g01661 . 33 213 Nodulin-like Gene Family AT3G25190 61.3 2.0e-52 202.6
Csa06g00530 . 33 213 Nodulin-like Gene Family AT3G25190 61.3 2.0e-52 202.6
Csa07g01425 . 20 189 Nodulin-like Gene Family AT3G25190 58.2 9.7e-47 183.7
Csa01g01661 . 33 214 Nodulin-like Gene Family AT1G21140 73.6 1.2e-64 243.0
Csa06g00530 . 33 214 Nodulin-like Gene Family AT1G21140 73.6 1.2e-64 243.0
Csa06g02351 . 9 197 Nodulin-like Gene Family AT1G21140 64.6 3.0e-63 238.4
Csa07g01425 . 30 189 Nodulin-like Gene Family AT1G21140 73.1 3.3e-57 218.4
Csa01g01661 . 33 210 Nodulin-like Gene Family AT3G43630 74.2 1.0e-63 240.0
Csa06g00530 . 33 210 Nodulin-like Gene Family AT3G43630 74.2 1.0e-63 240.0
Csa06g02351 . 9 193 Nodulin-like Gene Family AT3G43630 64.5 7.0e-60 227.3
Csa07g01425 . 30 190 Nodulin-like Gene Family AT3G43630 73.9 7.3e-57 217.2
Csa01g01661 . 33 214 Nodulin-like Gene Family AT3G43660 72.0 2.3e-63 238.8
Csa06g00530 . 33 214 Nodulin-like Gene Family AT3G43660 72.0 2.3e-63 238.8
Csa06g02351 . 9 197 Nodulin-like Gene Family AT3G43660 63.0 1.7e-61 232.6
Csa07g01425 . 26 190 Nodulin-like Gene Family AT3G43660 69.7 5.5e-57 217.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01587 Csa_Chr02 FPKM 0.868687 1.418928 0.877141 0.0 1.241617 1.049686 0.0 1.413235 2.473542 1.699939