Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01587 ATGATCATTATGAAATATATGAAGATGGATGAGCATAGAATAGCTTTCATGGCTGTGATTTTAATTCAAGCCATTTACGCTGGTATGTTTCTCGTCTCCAAGGCGGCTTTCGACGTTGGAATGAACAGCTATGTCTTCGTTTTCTATCGTCAAGCCTTCGCTACTGTCTTCCTTTCTCCAATAGCCTTCTTTTTTCAATGGAAAGATGCCCCACCCTTGACATTCTTCACCTTCTGCAAGATTTTTATGCTCTCTTTATTTGGGATAGCCCTATGTTTAAATCTTTATGGGATTGCTCTAGTGTACACATCAGCAACATTGGCTGCAGCAACTACAAATTCTCTTCCTGTCACCACCTTCTTTGTTGCCCTCTTACTTAGGATGGAGGTATTGAGGTTGAAGTCAATAGCAGGAATTGGAAAGTTAGCAGGAATATTATTTTGCATTGGTGGTGTTGGAGTTTTGGCATTTTACAAAGGGCCCCAGTTGAATTTTTTCAACCATCATCATCTCTTTTCCGTCCATAACCCTAATCACCATTCTTCTTCGGTTGCATTACCCAATACTTGGTTGAAGGGTTGCTTTTTGATGCTATCTGCCAATACCTTATGGGGTATTTGGATTGTTCTTCAGGCCTTTGTATTGAAAAGCTATCCTTCAAAGCTTATGTTGACAAATCTTCAGTGTTTATTAAGTTCATTTCAATCCTTTGCTATTGCTATTGCAATGGAAAGAGACCCTCAGCAATGGAAACTTGGCTGGAATCTTAGGCTTCTCTCAGTGGCATATTGTGGAATCGTGGTGACCGCGGTTACCTACTGTCTTCAAGCTTGGGTTATTGAGAAGAAAGGACCAGTTTATCTAGCCATGTCTACACCTATTGCTCTTGTCATTACAATCTTCTTCTCTGCTGTTTTTCTTGGAGAGAGTATCAGTCTTGGAAGTATCTTAGGAGGATTGTTATTGGTGGGAGGGTTGTATTTTGTGCTATGGGGAAAGAGCAAAGAGCAAAAAATAAGTGAAGGATTGAAAGAAGGTACCAAAGAATGCGACGACATGGAAGAAGGGAAAGATAGCACTAAACTACCCAATGAAAATCCAACATCTTCTGTGGAAAATGTTTGA 1125 40.09 MIIMKYMKMDEHRIAFMAVILIQAIYAGMFLVSKAAFDVGMNSYVFVFYRQAFATVFLSPIAFFFQWKDAPPLTFFTFCKIFMLSLFGIALCLNLYGIALVYTSATLAAATTNSLPVTTFFVALLLRMEVLRLKSIAGIGKLAGILFCIGGVGVLAFYKGPQLNFFNHHHLFSVHNPNHHSSSVALPNTWLKGCFLMLSANTLWGIWIVLQAFVLKSYPSKLMLTNLQCLLSSFQSFAIAIAMERDPQQWKLGWNLRLLSVAYCGIVVTAVTYCLQAWVIEKKGPVYLAMSTPIALVITIFFSAVFLGESISLGSILGGLLLVGGLYFVLWGKSKEQKISEGLKEGTKECDDMEEGKDSTKLPNENPTSSVENV* 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15034798 15041378 + CsaV3_2G018030.1 Csa02g01587 519644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01587 374 MobiDBLite consensus disorder prediction 342 361 - -
Csa02g01587 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 158 - -
Csa02g01587 374 PANTHER WAT1-RELATED PROTEIN 17 340 IPR030184 GO:0016021|GO:0022857
Csa02g01587 374 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 335 - -
Csa02g01587 374 Pfam EamA-like transporter family 17 140 IPR000620 GO:0016020|GO:0016021
Csa02g01587 374 Pfam EamA-like transporter family 192 330 IPR000620 GO:0016020|GO:0016021
Csa02g01587 374 MobiDBLite consensus disorder prediction 342 374 - -
Csa02g01587 374 PANTHER WAT1-RELATED PROTEIN 17 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01587 Csa-Chr2:15034798 Csa06g02809 Csa-Chr6:24496090 3.11E-114 dispersed
Csa06g02811 Csa-Chr6:24526657 Csa02g01587 Csa-Chr2:15034798 2.18E-64 dispersed
Csa02g01587 Csa-Chr2:15034798 Csa02g01588 Csa-Chr2:15044269 7.20E-142 tandem
Csa06g00524 Csa-Chr6:4426866 Csa02g01587 Csa-Chr2:15034798 1.78E-93 transposed
Csa02g01587 Csa-Chr2:15034798 Csa06g02805 Csa-Chr6:24461196 1.51E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01587 - - csv:101203024 699.893