Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01593 ATGGCTGATGCTGAGGATATCCAGCCACTTGTCTGCGACAATGGAACCGGAATGGTGAAGGCTGGATTTGCCGGTGATGATGCTCCCAGGGCAGTGTTTCCAAGTATTGTTGGCCGACCTCGACACACTGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTATGTTGGTGACGAGGCCCAATCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCACCTGAAGAACACCCAGTTCTTCTCACTGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAAACTTTTAATGTACCTGCCATGTATGTTGCCATTCAGGCCGTTCTATCACTGTATGCCAGTGGTCGTACAACAGGTATCGTGCTTGACTCTGGTGATGGTGTTAGTCATACTGTGCCAATCTACGAGGGTTATGCTCTTCCCCATGCTATCCTCCGTCTCGACCTTGCTGGTCGTGATCTAACTGATGCTTTGATGAAGATTCTCACTGAGAGAGGTTACATGTTCACAACCACTGCCGAACGGGAAATTGTCCGTGACATGAAAGAGAAGCTTGCTTATGTTGCACTCGACTATGAGCAGGAACTTGAGACTGCTAAGAGTAGCTCCTCAATTGAGAAGAACTATGAACTGCCCGATGGACAAGTCATCACAATTGGAGCTGAGAGATTCCGTTGCCCCGAAGTTCTTTTCCAGCCATCCCTCATTGGAATGGAAGCTGCTGGAATCCACGAGACTACCTACAACTCAATCATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGCAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATCGCTGACCGTATGAGCAAAGAGATCACAGCTCTTGCTCCCAGCAGCATGAAAATCAAGGTCGTTGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGATCCATCCTTGCATCGCTCAGTACCTTCCAGCAGATGTGGATCTCAAAGGGTGAGTACGACGAATCTGGCCCATCCATCGTCCACAGGAAGTGCTTCTAA 1134 47.09 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15080935 15084476 - CsaV3_2G018090.1 Csa02g01593 519650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01593 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Csa02g01593 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Csa02g01593 377 Gene3D - 10 371 - -
Csa02g01593 377 PRINTS Actin signature 28 37 IPR004000 -
Csa02g01593 377 PRINTS Actin signature 51 62 IPR004000 -
Csa02g01593 377 PRINTS Actin signature 63 85 IPR004000 -
Csa02g01593 377 PRINTS Actin signature 117 130 IPR004000 -
Csa02g01593 377 PRINTS Actin signature 142 161 IPR004000 -
Csa02g01593 377 PRINTS Actin signature 238 254 IPR004000 -
Csa02g01593 377 Gene3D - 140 340 - -
Csa02g01593 377 PANTHER ACTIN 1 376 IPR004000 -
Csa02g01593 377 SMART actin_3 7 377 IPR004000 -
Csa02g01593 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Csa02g01593 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Csa02g01593 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Csa02g01593 377 PANTHER ACTIN 1 376 - -
Csa02g01593 377 Pfam Actin 5 377 IPR004000 -
Csa02g01593 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Csa02g01593 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01593 Csa-Chr2:15080935 Csa03g03574 Csa-Chr3:31919491 0 dispersed
Csa02g02579 Csa-Chr2:22519230 Csa02g01593 Csa-Chr2:15080935 4.93E-75 transposed
Csa07g02009 Csa-Chr7:19614640 Csa02g01593 Csa-Chr2:15080935 5.16E-66 transposed
Csa01g00370 Csa-Chr1:2306890 Csa02g01593 Csa-Chr2:15080935 3.72E-92 transposed
Csa02g00205 Csa-Chr2:1407553 Csa02g01593 Csa-Chr2:15080935 2.26E-48 transposed
Csa05g02253 Csa-Chr5:25182312 Csa02g01593 Csa-Chr2:15080935 2.21E-72 transposed
Csa07g00510 Csa-Chr7:3678055 Csa02g01593 Csa-Chr2:15080935 0 transposed
Csa02g01593 Csa-Chr2:15080935 Csa06g02804 Csa-Chr6:24455342 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01593 K10355 - csv:101215469 758.059