Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01602 ATGGTGTTCCCCAGAAAACCCACTTTCCCATTCTCCAAATCCACTCTCCTTTTCCTCTCCATGGCTTCCCTCTCCTTTCTCTCTTTCCTCTCTCTTTTCTTCTTCTTCTCCTCCCTCTCTCTCTCTTCCTCCTCCGCCGACCACCACCACCACCCCCACCCCCACCTCCCATCCCATTTCACCAACTACCCCTCCGACCAGATCCTTCACGCTTGCAAATCCACCCGTTTCCCCGATCAATGCGGATCTTCCCTCTCTCACTCCTCTCTCCCCCCTAATCCCTCCCCTCTCCAAATCCTTCAATCCGCCATCGCTTTATCCTCCGACGGTCTAACCACTGCCCAATCCTTGGTTAAACAGATCCTCGATTCCTCTGCCACGAATCTCAATCGTACCACCGCCGCCAAGAATTGCCTCGAGGTCCTACGAAATTCCGATTACCGAATCTCCCTCACCAATGACGCTCTCCACCACGGTCGAACCAAAGACGCCCGCGCCTGGCTCAGCGCGTCTCTGCTTTACCATTACGATTGCTGGTCAGCGCTTAAATACGCGAACGACACTCAGTTGGTTGATAAAACCATGGCGTTTCTTGATTCTTTAATCGGTCTCTCCAGTAATGCGCTTAGTATGTTGGTGGCTTATGATATTTACGGAAATGATACGGCGGCGTGGACGCCACCGAGGACAGAGCGCGATGGGTTTTGGGAAGGCGGAGGTGGATCTGGGTTGGGGTTTAGCGGTGGGTTTCCGGCAAAGGTGACGGCAGATGCGACGGTGTGTAAGGATGGTAGTGGGGGTTGTTATGGAAGTATTCAGAAAGCGGTGGATGCGGCGCCGGAGAACGCGGCTGCGCGTAGGTTTGTGATTCATATTAAAGAAGGCGTTTATGAGGAAATCGTGAGGGTTCCGTTAGAGAAGAAGAATGTTGTGTTTTTAGGAGATGGGATGGGCAAAACGGTCATCACTGGCTCTTTGAATGTAGGCCAGCCTGGGCTTTCCACTTACAACACTGCCACCCTTGGAGTAGTTGGTGATGGATTCATGGCTAGTGGTCTCACCATTCAAAACACAGCAGGGCCTGATGCCCATCAAGCTGTGGCCTTTAGATCAGACAGCGATCTCTCTGTGATTCAAGATTGTGAGTTTCTAGGCAACCAAGATACTCTCTATGCTCATTCCCTTCGCCAATTCTACAAATCTTGTAAGATTCAAGGCAATGTAGATTTCATCTTTGGAAACTCAGCCTCCATCTTCCAAGATTGCGAGATCCTAGTCCGCCCTCGACAACTCAAGCCCGAGAAAGGCGAAAACAACGCCGTAACTGCACATGGGAGGACCGACCCTGCTCAATCCACTGGTTTTGTATTCCAAAACTGCCTCATAAATGGAACTCAAGAGTATATGTCATTGTACTACAGCAAGCCTCAAGTACATAAGAACTTCTTGGGGAGGCCGTGGAAGGAGTACTCGAGGACGGTTTTTATACACTGTAATCTGGAGGCTCTTGTGTCCCCGTCGGGGTGGATGCCGTGGAGTGGAGATTTTGCTTTGAAGACTCTGTTCTACGGAGAGTTTGAGAACTCGGGTGCGGGGTCGAAGACGTCGGAGAGAGTGGGTTGGAGTAGTCAGATTCCGGCACAACATGTTTTTAGTTACTCTGTTGAGAATTTCATTCAGGGAGATGAATGGATTCCTTCATCTGAATCATCTGATGAACAAAAAATGTTGAACAAGAGAAGTAAAGATGTAAAATTAGATTAG 1764 49.77 MVFPRKPTFPFSKSTLLFLSMASLSFLSFLSLFFFFSSLSLSSSSADHHHHPHPHLPSHFTNYPSDQILHACKSTRFPDQCGSSLSHSSLPPNPSPLQILQSAIALSSDGLTTAQSLVKQILDSSATNLNRTTAAKNCLEVLRNSDYRISLTNDALHHGRTKDARAWLSASLLYHYDCWSALKYANDTQLVDKTMAFLDSLIGLSSNALSMLVAYDIYGNDTAAWTPPRTERDGFWEGGGGSGLGFSGGFPAKVTADATVCKDGSGGCYGSIQKAVDAAPENAAARRFVIHIKEGVYEEIVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGLSTYNTATLGVVGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSVIQDCEFLGNQDTLYAHSLRQFYKSCKIQGNVDFIFGNSASIFQDCEILVRPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGTQEYMSLYYSKPQVHKNFLGRPWKEYSRTVFIHCNLEALVSPSGWMPWSGDFALKTLFYGEFENSGAGSKTSERVGWSSQIPAQHVFSYSVENFIQGDEWIPSSESSDEQKMLNKRSKDVKLD* 588
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 15140340 15142934 - CsaV3_2G018180.1 Csa02g01602 519659
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01602 587 PANTHER PECTINESTERASE 16 568 - -
Csa02g01602 587 CDD PMEI-like_3 71 211 - -
Csa02g01602 587 TIGRFAM PME_inhib: pectinesterase inhibitor domain 30 211 IPR006501 GO:0004857
Csa02g01602 587 PANTHER PECTINESTERASE 16 568 - -
Csa02g01602 587 SUPERFAMILY Pectin lyase-like 255 567 IPR011050 -
Csa02g01602 587 MobiDBLite consensus disorder prediction 573 587 - -
Csa02g01602 587 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 211 IPR035513 -
Csa02g01602 587 Pfam Pectinesterase 257 562 IPR000070 GO:0030599|GO:0042545
Csa02g01602 587 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 214 IPR035513 -
Csa02g01602 587 MobiDBLite consensus disorder prediction 566 587 - -
Csa02g01602 587 Pfam Plant invertase/pectin methylesterase inhibitor 68 211 IPR006501 GO:0004857
Csa02g01602 587 Gene3D - 251 575 IPR012334 -
Csa02g01602 587 SMART PMEI_2 63 211 IPR006501 GO:0004857
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01602 Csa-Chr2:15140340 Csa03g01619 Csa-Chr3:12092582 3.09E-108 dispersed
Csa02g01602 Csa-Chr2:15140340 Csa02g01603 Csa-Chr2:15144070 0 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01602 - - csv:101221165 1098.96