Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01603 ATGCCTTCTCTTCTCTTTCTCTTCTTCCTCCCTCTACATTTCTCCTCCGCCGCCCACCAAACCCTTCTCCCTGACATCGCCGCCGCCTGCAACGCCACCCGCTTCCCGGACCAATGCGCATCCTCCATCTCCCAATCCAGCCGTCTCCCCCAGAATCCCACTTCGCTGCAGATCATTCAGGCCGCCCTCTACCTCTCCTCGGACAATCTCAAGACTGCTAAATCCATGGTGAAAGCCATTCTCGATTCTGCTGAGAAGATTCCCAACCGCAACCGCACCGAGAAGGCGCTAAGCTGTATGGATGCGTTGGGTTATTCGGAGTACAGAATTTCCCTTTCCAACGACGCAATTCCGCTCGGTCGAATTAAAGACGCGCGCGCGTGGTTAAGCGCGTCCCTCCTCTACCAGACCGGTTGCCGGTCGGGGTTGAAGTACGTGAACGACACGCGTGAAGTGGATCAAACGATGTTATTTCTTGACAACTTAACCGTGCTGTCCAGCAACGCGCTGAGCATGGTGGTGGCGTACGATAATTTCGGGAATGAGACGGCGGCGTGGAGACCACCGAGGACGGAGCGAGACGGGTTCTGGGAACGGAGCAGTGGAACGGGGGAGGTGGTGAGAGGGGTGAGGATTCCAACGAAGACAGAGGCGAATGTGACGGTGTGTAAGGATGGGAGTGAGGGGTGTTATAGGACGGTGCAAGCGGCGGTGGATGCGGCGCCGGGAGAGTCGGCGGTGAGGTTTGTGATACACATAAAGGAAGGGGTTTACGAAGAGAGTGTGAGAGTGGGAATGGAGAAGAAGAATTTGGTGTTTTTGGGGGATGGGATGGGCAAAACGGTGATTACCGGATCTTTGAACGTGGGTCAGCCTGGGATCTCGACTTACAATTCGGCCACCGTCGGAGTTCTTGGGGATGGATTCATTGCTAGTGAACTCACCATTCAAAACACAGCAGGTCCTGACGCCCATCAAGCTGTTGCCTTTAGATCAGACAGTGACCTCTCGATCATAGATAACTGTGAGTTTATAAGCAATCAAGACACTCTTTACGCCCATTCCCTCCGTCAATTCTACAACTCCTGTCGTATTTTAGGCAACGTGGACTTCATTTTTGGCAACTCAGCTTCCATGTTTCTAAACTGTCATATCTTAATTCGTCCTCACCAACTCAATCCTCAACTCGGAGATGAGAATGCAATCACTGCACATGGGAGGACAGACCCAGCGCAGTCGACTGGGTTTGTGTTCCAAAACTGCTTGATAAATGGCACTGAGGAGTTCATGGCATTGTACTATGCCAATCCTCAGAGGCATAGGACCTTCTTGGGGCGGCCTTGGAAAGAGTATTCGAGAACGGTTTTTATACATTGTGAACTTGAAGCTCTTGTTTCGTCATCCGGATGGATGGCATGGAGTGGAGATATTGGATTGAATACACTATATTATGGGGAGTTTGAGAATTTTGGGACTGGTTCAAATTCGTCAAAACGAGTTGCATGGAGCAATCAAATCCCTGCAGAGTATGTTTTTAGTTACTCTGTACAGAATTTCATCCAAGGAAATGAGTGGATTCCTTCCTCTTAA 1590 50.69 MPSLLFLFFLPLHFSSAAHQTLLPDIAAACNATRFPDQCASSISQSSRLPQNPTSLQIIQAALYLSSDNLKTAKSMVKAILDSAEKIPNRNRTEKALSCMDALGYSEYRISLSNDAIPLGRIKDARAWLSASLLYQTGCRSGLKYVNDTREVDQTMLFLDNLTVLSSNALSMVVAYDNFGNETAAWRPPRTERDGFWERSSGTGEVVRGVRIPTKTEANVTVCKDGSEGCYRTVQAAVDAAPGESAVRFVIHIKEGVYEESVRVGMEKKNLVFLGDGMGKTVITGSLNVGQPGISTYNSATVGVLGDGFIASELTIQNTAGPDAHQAVAFRSDSDLSIIDNCEFISNQDTLYAHSLRQFYNSCRILGNVDFIFGNSASMFLNCHILIRPHQLNPQLGDENAITAHGRTDPAQSTGFVFQNCLINGTEEFMALYYANPQRHRTFLGRPWKEYSRTVFIHCELEALVSSSGWMAWSGDIGLNTLYYGEFENFGTGSNSSKRVAWSNQIPAEYVFSYSVQNFIQGNEWIPSS* 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15144070 15146421 - CsaV3_2G018190.1 Csa02g01603 519660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01603 529 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 175 IPR035513 -
Csa02g01603 529 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 8 527 - -
Csa02g01603 529 SUPERFAMILY Pectin lyase-like 216 528 IPR011050 -
Csa02g01603 529 Pfam Plant invertase/pectin methylesterase inhibitor 26 172 IPR006501 GO:0004857
Csa02g01603 529 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 173 IPR035513 -
Csa02g01603 529 Pfam Pectinesterase 219 523 IPR000070 GO:0030599|GO:0042545
Csa02g01603 529 Gene3D - 216 529 IPR012334 -
Csa02g01603 529 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 172 IPR006501 GO:0004857
Csa02g01603 529 CDD PMEI-like_3 28 173 - -
Csa02g01603 529 SMART PMEI_2 21 172 IPR006501 GO:0004857
Csa02g01603 529 PANTHER PECTINESTERASE 8 527 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01603 Csa-Chr2:15144070 Csa03g01619 Csa-Chr3:12092582 1.17E-102 dispersed
Csa02g01602 Csa-Chr2:15140340 Csa02g01603 Csa-Chr2:15144070 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01603 - - csv:101220929 1059.67