Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01615 ATGGATGGACAAGCTTCGATATCCAATGGCACAGATGATACCATTGTCTGCTATGCGCCGACGATGATTACGACAAATGGGGTGTGGCAAGGTGACAACCCTTTGGATTATTCTCTCCCCCTTTTCATCTTGCAGTTAACAATGGTGGTTGTGATGACTCGCATTTTGGTTTTCCTCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCTGAAATTTTGGGTGGAGTGATTTTGGGGCCTTCGGTACTAGGGAGGAGTTCTAAATTTGCCAACACGGTATTTCCTCTAAGAAGTGTAATGGTGCTTGAGACAATGGCCAATGTGGGGCTTCTCTACTTTCTGTTCTTGGTTGGTGTTGAAATGGATCTCTCAGTGATTCGTCGAACAGGGAAGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCGTTCGGAATAGGAGCTGCCTTTTCATTCCAATTGCACAAAGAAAGCCAAAAATTGAACTACAACACTTACATTATGTTTCTTGGTATTGCGCTCTCTGTGACTGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTTATAAATTCAGAGCTGGGAAGGATGGCTATGGCATCTGCACTTTTCAACGATATGTGTGCTTGGGTTCTCTTAGCTTTAGCCATAGCCTTATCGGAGAATGATTCCTCATCTTTTGCTTCATTATGGGTTGTACTGTCAAGTGCAGCCTTCGTTTTGTTTTGCATTTTCATCGTTAGACCAATGATTTCATGGATGATTCGAAAAACTCCAGAAGGGGAAAGTGTGAGTGAGTTCTACATATGTTTGATTCTGACAGGAGTTATGATCTCAGGATTTGTTACAGATGCCATAGGAACACACTCCGTTTTTGGGGCTTTTGTGTTTGGTTTAGTTATCCCAAATGGTTCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGCCTCTTGCTTCCTCTTTTCTTCGCAATAAGTGGGCTTAAGACTAATATTTCAAGCATAGAAGGAATATTCGCTTGGATATCTATTCTATGTATCACTCTCCTTGCTTTCCTTGGCAAAGTCATAGGAACTCTTCTTGCCTCCATTTGTTATCAAATGTCCTATCGTGAAGGCGTCACGTTAGGTTTGCTTATGAACACCAAAGGCCTTATTGAAATGATCATCCTCAATGTCGGAAAGGATCAGAAGGTGTTAGATGATCAAACATTCACAGTCATGGTGATTGTAGCTCTCATTATGACAGGGATAATAACACCAGTAGTTACCATAATCTATAGGCCAACAAGAAGGTTTCTACCCTATAAGAAACGAACAATCCAAGCATCAAAACCAGATTCAGAATTTAGAGTATTAGTTTGTATACACACACCTCGAAATGTGCCAACTATCATCAACCTCCTTGATGCTTCCCATCCAACTAAAAGATCCCCAATTTGCATTTACGTGCTACACTTGGTTGAACTCACAGGTCGAGCCTCCGCCATGCTCATTGTCCACAACACCAGAAAATCAGGCCGCCCTGCATTAAATCGAACACAAGCTCAATCAGATCACATCATTAATGCATTCGAGAACTATGAACAACACGTCGATTGCGTCTCTGTTCAACCTCTCACCGCCATTTCCCCTTACTCCACAATGCACGAAGACATCTGCAATTTAGCTGAAGATAAACGAGTTGCGTTCATAATCATCCCATTCCATAAACAACAAACAGTGGATGGAGGAATGGAAGCCTCAAATCCAGCATTTAGATTGGTAAACCAAAATGTATTAGCTAATGCCCCTTGCTCCGTCGGAATCCTAGTCGATCGAGGCTTAAACGGCGCGAATCGAGCCACATCAAACAAAGGAACTCATTATAACATAATCGTGTTGTTCTTTGGTGGGCAAGATGATAGAGAAGCCCTATCATATGCATGGAGAATGTCAGAACATCCAGGAGTGAATTTAACCGTAATGAGATTCATCGCCGCACAAGAAATAATGGAACCAAAACTAGAAGAAAACACATCAAGAATTTCAACAATGGAAACAGAAATGAACAGAGATAGGAAACTGGACGAAGATCATATAAGCGAATTTAGGGCAAGGAACCCAAACAGTGAGTCAATTACTTACACAGAAAAAGTGTTGAACAACGGCGAAGAGACAGTGGCGGCCATAAGATCAATGAACGATGCTCACGACCTGTTCATCGTTGGTAGAGGTGAATCTCACATATCACCCCTCACTGCCGGACTAACGGACTGGAGTGAATGTCCAGAGCTGGGAGCAATAGGCGATTTGCTAGCCTCATCGGATTTTGCGGCAACAACTTCAGTTTTGGTAGTGCAACAGTTCGGAACAACAATGGCGGGTGAGCATGGAGAAGAAGAAGAAGTTACACCACGTAATCTTGATCCAAATGATCCTTACCAAAGCTTGAGATCCACGAATTTGAGGCAACATACTCCATCGAGAACTCAAATAATTTATGATACATGA 2514 42.28 MDGQASISNGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRILVFLLKPFRQPRVISEILGGVILGPSVLGRSSKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMILPFGIGAAFSFQLHKESQKLNYNTYIMFLGIALSVTAFPVLARILAELKLINSELGRMAMASALFNDMCAWVLLALAIALSENDSSSFASLWVVLSSAAFVLFCIFIVRPMISWMIRKTPEGESVSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNISSIEGIFAWISILCITLLAFLGKVIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALIMTGIITPVVTIIYRPTRRFLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIINLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEASNPAFRLVNQNVLANAPCSVGILVDRGLNGANRATSNKGTHYNIIVLFFGGQDDREALSYAWRMSEHPGVNLTVMRFIAAQEIMEPKLEENTSRISTMETEMNRDRKLDEDHISEFRARNPNSESITYTEKVLNNGEETVAAIRSMNDAHDLFIVGRGESHISPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGTTMAGEHGEEEEVTPRNLDPNDPYQSLRSTNLRQHTPSRTQIIYDT* 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15210953 15214003 - CsaV3_2G018310.1 Csa02g01615 519672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01615 837 PANTHER BNAA09G08340D PROTEIN 12 806 - -
Csa02g01615 837 MobiDBLite consensus disorder prediction 795 820 - -
Csa02g01615 837 Gene3D - 41 439 IPR038770 -
Csa02g01615 837 PANTHER CATION/H + ANTIPORTER 12 806 - -
Csa02g01615 837 Gene3D - 478 759 - -
Csa02g01615 837 Pfam Sodium/hydrogen exchanger family 49 432 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00473 Csa-Chr1:2997502 Csa02g01615 Csa-Chr2:15210953 3.05E-177 dispersed
Csa01g02545 Csa-Chr1:22431238 Csa02g01615 Csa-Chr2:15210953 2.14E-158 dispersed
Csa02g01615 Csa-Chr2:15210953 Csa04g00626 Csa-Chr4:4157503 0 dispersed
Csa03g04658 Csa-Chr3:40456796 Csa02g01615 Csa-Chr2:15210953 2.21E-109 dispersed
Csa05g01650 Csa-Chr5:19646019 Csa02g01615 Csa-Chr2:15210953 4.69E-129 dispersed
Csa07g00629 Csa-Chr7:4555610 Csa02g01615 Csa-Chr2:15210953 2.69E-10 dispersed
Csa07g02004 Csa-Chr7:19586808 Csa02g01615 Csa-Chr2:15210953 2.70E-116 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01615 - - csv:101219265 1633.23