Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01615 ATGGATGGACAAGCTTCGATATCCAATGGCACAGATGATACCATTGTCTGCTATGCGCCGACGATGATTACGACAAATGGGGTGTGGCAAGGTGACAACCCTTTGGATTATTCTCTCCCCCTTTTCATCTTGCAGTTAACAATGGTGGTTGTGATGACTCGCATTTTGGTTTTCCTCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCTGAAATTTTGGGTGGAGTGATTTTGGGGCCTTCGGTACTAGGGAGGAGTTCTAAATTTGCCAACACGGTATTTCCTCTAAGAAGTGTAATGGTGCTTGAGACAATGGCCAATGTGGGGCTTCTCTACTTTCTGTTCTTGGTTGGTGTTGAAATGGATCTCTCAGTGATTCGTCGAACAGGGAAGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCGTTCGGAATAGGAGCTGCCTTTTCATTCCAATTGCACAAAGAAAGCCAAAAATTGAACTACAACACTTACATTATGTTTCTTGGTATTGCGCTCTCTGTGACTGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTTATAAATTCAGAGCTGGGAAGGATGGCTATGGCATCTGCACTTTTCAACGATATGTGTGCTTGGGTTCTCTTAGCTTTAGCCATAGCCTTATCGGAGAATGATTCCTCATCTTTTGCTTCATTATGGGTTGTACTGTCAAGTGCAGCCTTCGTTTTGTTTTGCATTTTCATCGTTAGACCAATGATTTCATGGATGATTCGAAAAACTCCAGAAGGGGAAAGTGTGAGTGAGTTCTACATATGTTTGATTCTGACAGGAGTTATGATCTCAGGATTTGTTACAGATGCCATAGGAACACACTCCGTTTTTGGGGCTTTTGTGTTTGGTTTAGTTATCCCAAATGGTTCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGCCTCTTGCTTCCTCTTTTCTTCGCAATAAGTGGGCTTAAGACTAATATTTCAAGCATAGAAGGAATATTCGCTTGGATATCTATTCTATGTATCACTCTCCTTGCTTTCCTTGGCAAAGTCATAGGAACTCTTCTTGCCTCCATTTGTTATCAAATGTCCTATCGTGAAGGCGTCACGTTAGGTTTGCTTATGAACACCAAAGGCCTTATTGAAATGATCATCCTCAATGTCGGAAAGGATCAGAAGGTGTTAGATGATCAAACATTCACAGTCATGGTGATTGTAGCTCTCATTATGACAGGGATAATAACACCAGTAGTTACCATAATCTATAGGCCAACAAGAAGGTTTCTACCCTATAAGAAACGAACAATCCAAGCATCAAAACCAGATTCAGAATTTAGAGTATTAGTTTGTATACACACACCTCGAAATGTGCCAACTATCATCAACCTCCTTGATGCTTCCCATCCAACTAAAAGATCCCCAATTTGCATTTACGTGCTACACTTGGTTGAACTCACAGGTCGAGCCTCCGCCATGCTCATTGTCCACAACACCAGAAAATCAGGCCGCCCTGCATTAAATCGAACACAAGCTCAATCAGATCACATCATTAATGCATTCGAGAACTATGAACAACACGTCGATTGCGTCTCTGTTCAACCTCTCACCGCCATTTCCCCTTACTCCACAATGCACGAAGACATCTGCAATTTAGCTGAAGATAAACGAGTTGCGTTCATAATCATCCCATTCCATAAACAACAAACAGTGGATGGAGGAATGGAAGCCTCAAATCCAGCATTTAGATTGGTAAACCAAAATGTATTAGCTAATGCCCCTTGCTCCGTCGGAATCCTAGTCGATCGAGGCTTAAACGGCGCGAATCGAGCCACATCAAACAAAGGAACTCATTATAACATAATCGTGTTGTTCTTTGGTGGGCAAGATGATAGAGAAGCCCTATCATATGCATGGAGAATGTCAGAACATCCAGGAGTGAATTTAACCGTAATGAGATTCATCGCCGCACAAGAAATAATGGAACCAAAACTAGAAGAAAACACATCAAGAATTTCAACAATGGAAACAGAAATGAACAGAGATAGGAAACTGGACGAAGATCATATAAGCGAATTTAGGGCAAGGAACCCAAACAGTGAGTCAATTACTTACACAGAAAAAGTGTTGAACAACGGCGAAGAGACAGTGGCGGCCATAAGATCAATGAACGATGCTCACGACCTGTTCATCGTTGGTAGAGGTGAATCTCACATATCACCCCTCACTGCCGGACTAACGGACTGGAGTGAATGTCCAGAGCTGGGAGCAATAGGCGATTTGCTAGCCTCATCGGATTTTGCGGCAACAACTTCAGTTTTGGTAGTGCAACAGTTCGGAACAACAATGGCGGGTGAGCATGGAGAAGAAGAAGAAGTTACACCACGTAATCTTGATCCAAATGATCCTTACCAAAGCTTGAGATCCACGAATTTGAGGCAACATACTCCATCGAGAACTCAAATAATTTATGATACATGA 2514 42.28 MDGQASISNGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRILVFLLKPFRQPRVISEILGGVILGPSVLGRSSKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMILPFGIGAAFSFQLHKESQKLNYNTYIMFLGIALSVTAFPVLARILAELKLINSELGRMAMASALFNDMCAWVLLALAIALSENDSSSFASLWVVLSSAAFVLFCIFIVRPMISWMIRKTPEGESVSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNISSIEGIFAWISILCITLLAFLGKVIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALIMTGIITPVVTIIYRPTRRFLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIINLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEASNPAFRLVNQNVLANAPCSVGILVDRGLNGANRATSNKGTHYNIIVLFFGGQDDREALSYAWRMSEHPGVNLTVMRFIAAQEIMEPKLEENTSRISTMETEMNRDRKLDEDHISEFRARNPNSESITYTEKVLNNGEETVAAIRSMNDAHDLFIVGRGESHISPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGTTMAGEHGEEEEVTPRNLDPNDPYQSLRSTNLRQHTPSRTQIIYDT* 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15210953 15214003 - CsaV3_2G018310.1 Csa02g01615 519672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01615 837 PANTHER BNAA09G08340D PROTEIN 12 806 - -
Csa02g01615 837 MobiDBLite consensus disorder prediction 795 820 - -
Csa02g01615 837 Gene3D - 41 439 IPR038770 -
Csa02g01615 837 PANTHER CATION/H + ANTIPORTER 12 806 - -
Csa02g01615 837 Gene3D - 478 759 - -
Csa02g01615 837 Pfam Sodium/hydrogen exchanger family 49 432 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01615 - - - csv:101219265 1633.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00473 Csa-Chr1:2997502 Csa02g01615 Csa-Chr2:15210953 3.05E-177 dispersed
Csa01g02545 Csa-Chr1:22431238 Csa02g01615 Csa-Chr2:15210953 2.14E-158 dispersed
Csa02g01615 Csa-Chr2:15210953 Csa04g00626 Csa-Chr4:4157503 0 dispersed
Csa03g04658 Csa-Chr3:40456796 Csa02g01615 Csa-Chr2:15210953 2.21E-109 dispersed
Csa05g01650 Csa-Chr5:19646019 Csa02g01615 Csa-Chr2:15210953 4.69E-129 dispersed
Csa07g00629 Csa-Chr7:4555610 Csa02g01615 Csa-Chr2:15210953 2.69E-10 dispersed
Csa07g02004 Csa-Chr7:19586808 Csa02g01615 Csa-Chr2:15210953 2.70E-116 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g01615 . 11 805 Antiporter Super Family AT2G13620 72.5 0.0e+00 1157.9
Csa04g00628 . 11 785 Antiporter Super Family AT2G13620 50.4 2.2e-208 722.6
Csa04g00627 . 15 776 Antiporter Super Family AT2G13620 50.1 3.5e-206 715.3
Csa04g01471 . 78 848 Antiporter Super Family AT3G53720 69.2 1.5e-291 998.8
Csa04g00626 . 83 779 Antiporter Super Family AT3G53720 50.6 3.5e-184 642.1
Csa04g00627 . 86 773 Antiporter Super Family AT3G53720 50.2 1.0e-183 640.6
Csa04g00626 . 1 779 Antiporter Super Family AT5G41610 69.6 2.8e-309 1057.7
Csa04g00627 . 9 797 Antiporter Super Family AT5G41610 67.1 9.7e-302 1032.7
Csa04g00628 . 1 797 Antiporter Super Family AT5G41610 65.2 2.7e-296 1014.6
Csa04g00629 . 2 791 Antiporter Super Family AT5G41610 63.9 6.5e-282 966.8
Csa04g01471 . 10 851 Antiporter Super Family AT5G41610 50.5 1.9e-209 726.1
Csa04g00627 . 16 797 Antiporter Super Family AT4G23700 65.4 3.7e-293 1004.2
Csa04g00628 . 11 802 Antiporter Super Family AT4G23700 64.7 9.5e-289 989.6
Csa04g00626 . 9 796 Antiporter Super Family AT4G23700 62.5 9.9e-278 953.0
Csa04g00629 . 10 791 Antiporter Super Family AT4G23700 62.6 6.0e-275 943.7
Csa04g00628 . 4 783 Antiporter Super Family AT3G17630 63.2 3.8e-274 941.0
Csa04g00627 . 9 796 Antiporter Super Family AT3G17630 62.8 2.5e-273 938.3
Csa04g00626 . 11 779 Antiporter Super Family AT3G17630 63.7 8.7e-271 929.9
Csa04g00629 . 6 791 Antiporter Super Family AT3G17630 59.6 4.2e-257 884.4
Csa04g01471 . 10 819 Antiporter Super Family AT3G17630 52.9 2.1e-208 722.6
Csa04g00628 . 4 785 Antiporter Super Family AT1G64170 57.6 5.6e-241 830.9
Csa04g00627 . 5 777 Antiporter Super Family AT1G64170 57.8 2.4e-239 825.5
Csa04g00626 . 15 784 Antiporter Super Family AT1G64170 56.7 3.1e-231 798.5
Csa04g00629 . 3 791 Antiporter Super Family AT1G64170 55.0 2.9e-229 792.0
Csa02g01615 . 11 805 Antiporter Super Family AT2G13620 72.5 0.0e+00 1157.9
Csa04g00628 . 11 785 Antiporter Super Family AT2G13620 50.4 2.2e-208 722.6
Csa04g00627 . 15 776 Antiporter Super Family AT2G13620 50.1 3.5e-206 715.3
Csa04g00628 . 4 785 Antiporter Super Family AT1G64170 57.6 5.6e-241 830.9
Csa04g00627 . 5 777 Antiporter Super Family AT1G64170 57.8 2.4e-239 825.5
Csa04g00626 . 15 784 Antiporter Super Family AT1G64170 56.7 3.1e-231 798.5
Csa04g00629 . 3 791 Antiporter Super Family AT1G64170 55.0 2.9e-229 792.0
Csa04g00627 . 16 797 Antiporter Super Family AT4G23700 65.4 3.7e-293 1004.2
Csa04g00628 . 11 802 Antiporter Super Family AT4G23700 64.7 9.5e-289 989.6
Csa04g00626 . 9 796 Antiporter Super Family AT4G23700 62.5 9.9e-278 953.0
Csa04g00629 . 10 791 Antiporter Super Family AT4G23700 62.6 6.0e-275 943.7
Csa04g00626 . 1 779 Antiporter Super Family AT5G41610 69.6 2.8e-309 1057.7
Csa04g00627 . 9 797 Antiporter Super Family AT5G41610 67.1 9.7e-302 1032.7
Csa04g00628 . 1 797 Antiporter Super Family AT5G41610 65.2 2.7e-296 1014.6
Csa04g00629 . 2 791 Antiporter Super Family AT5G41610 63.9 6.5e-282 966.8
Csa04g01471 . 10 851 Antiporter Super Family AT5G41610 50.5 1.9e-209 726.1
Csa04g00628 . 4 783 Antiporter Super Family AT3G17630 63.2 3.8e-274 941.0
Csa04g00627 . 9 796 Antiporter Super Family AT3G17630 62.8 2.5e-273 938.3
Csa04g00626 . 11 779 Antiporter Super Family AT3G17630 63.7 8.7e-271 929.9
Csa04g00629 . 6 791 Antiporter Super Family AT3G17630 59.6 4.2e-257 884.4
Csa04g01471 . 10 819 Antiporter Super Family AT3G17630 52.9 2.1e-208 722.6
Csa04g01471 . 78 848 Antiporter Super Family AT3G53720 69.2 1.5e-291 998.8
Csa04g00626 . 83 779 Antiporter Super Family AT3G53720 50.6 3.5e-184 642.1
Csa04g00627 . 86 773 Antiporter Super Family AT3G53720 50.2 1.0e-183 640.6
Csa07g02004 . 47 791 Antiporter Super Family AT3G52080 54.1 4.7e-232 801.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa02g01615 Csa_Chr02 FPKM 21.926062 25.68466 37.721283 42.160297 4.277736 3.865234 4.437772 75.416603 78.376968 79.771957