Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01639 ATGGATGGAAGAGGGAATAGTAATAATAATGTTCATGATCATCCTCCAAATGCAAAGTTTGAGTTCACTCCAACATGGATCATTGCTGTTGTTTCATCCATTATCGTTATCATTTCCTTCTCCCTTGAGCGTGGCCTTCATCACCTTGGACAGAAGTTGCAGAAGAAACAGATGGATGAACTAAATCATGCGTTGCTGAAACTAAAAGAAGAGTTAATGATTTTAGGGTTTATCTCCCTATTATTCAACGTGTTTCAAGGGGCAATCGGACGTTTTTGTATGCCCAAAGATTTTGCATACCATATGCTTCCATGTAAGAGAAGTACCGTGCCCGTTGTTAATCATTTCTCATCGTCAAATTTTGTCGATCACAATTACAATATTCACCGTCATCTATTATCGACAACTCAAGCTAATTTTCAACATTGCTCACGAAAAGGGAAGGTTCCTCTATTATCTTTGGAAGCATTGCATCAGCTCCATATATTCATATTTGTGTTGGCTGTTGTTCATGTCATCTTCTGTGCTACAACCATGCTTCTAGCCTCTGCAAAGATACGATTGTGGAAGAGATGGGAAGAATCTATTGATAAGCGCCAACCTACGCAATCTGAAGATGATGATGAGTTTAATAAACGAGCCGTTGGCTTTTGGAGAAGGGCTGCCGTCATTGCTTGGATGATGGCATTTAGAAAGCAGTTTTATGGATCAATTACAAAGTCGGATTACAAATATCTTCGACGAGGCTTTATTAAGAAACATTGCCCAGGGGAACTTAATTTTGATTTCTATGATCACATTAAAAAAACTTATCAACATGATTTCAAGAAAGTTGTTGGTATAAGTTGGTATCTTTGGGCCTTTGTTGTGCTGTTCTTACTGCTTAATCTTGAAGGATGGCACACTTATTTTTGGTTGTCATTTCTACCGCTAATTATGCTACTTCTCGTGGGAGCAAAGTTGGAATACATAATAACACGTATGGCTCAAGAATTAAACTTGAAAATCGAAGACAAAGAAGCACAACAACAACAACGACAACAACAAGAACGTGATGAAAGACATTTCGATAGACAACAACACCGTAGGAATATCAATAGACATGGTAGCCACCACCATGTGGATCCTTCCGATGAGTACTTTTGGTTTCATTCTCCTTCATGTGTTCTTCATTTGATTCACTTCATTCTCTTCCAAAATTCCTTCGAGATTGCCTTCTTCTTTTGGATTTGGACAACTTATGGATTTAAGTCTTGCATTATGGAGAAACCTGCCTATATCATCACCAGACTCATTTTAGGTGGGATTGTCCAAGTGCTATGCAGTTACAGCACATTGCCTTTGTATTCTTTAGTCACTCAGATGGGAAGTGAATATAAGAAGCCATCTGATCATGAAGAGCATGGCAAAGCAGAAGAAAGAATTAGCTGA 1431 38.43 MDGRGNSNNNVHDHPPNAKFEFTPTWIIAVVSSIIVIISFSLERGLHHLGQKLQKKQMDELNHALLKLKEELMILGFISLLFNVFQGAIGRFCMPKDFAYHMLPCKRSTVPVVNHFSSSNFVDHNYNIHRHLLSTTQANFQHCSRKGKVPLLSLEALHQLHIFIFVLAVVHVIFCATTMLLASAKIRLWKRWEESIDKRQPTQSEDDDEFNKRAVGFWRRAAVIAWMMAFRKQFYGSITKSDYKYLRRGFIKKHCPGELNFDFYDHIKKTYQHDFKKVVGISWYLWAFVVLFLLLNLEGWHTYFWLSFLPLIMLLLVGAKLEYIITRMAQELNLKIEDKEAQQQQRQQQERDERHFDRQQHRRNINRHGSHHHVDPSDEYFWFHSPSCVLHLIHFILFQNSFEIAFFFWIWTTYGFKSCIMEKPAYIITRLILGGIVQVLCSYSTLPLYSLVTQMGSEYKKPSDHEEHGKAEERIS* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15516959 15521893 + CsaV3_2G019540.1 Csa02g01639 519696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01639 476 PANTHER MLO-LIKE PROTEIN 1 19 472 IPR004326 GO:0006952|GO:0016021
Csa02g01639 476 Coils Coil 51 71 - -
Csa02g01639 476 Pfam Mlo family 371 461 IPR004326 GO:0006952|GO:0016021
Csa02g01639 476 Pfam Mlo family 19 338 IPR004326 GO:0006952|GO:0016021
Csa02g01639 476 PANTHER MLO-LIKE PROTEIN 13 19 472 - -
Csa02g01639 476 Coils Coil 329 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01639 Csa-Chr2:15516959 Csa06g00633 Csa-Chr6:5305552 2.90E-148 dispersed
Csa02g01639 Csa-Chr2:15516959 Csa06g01679 Csa-Chr6:14713131 4.12E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01639 K08472 K01179 csv:101216903 963.755