Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa02g01643 ATGGCGACCAGGCTTATGTTTGAAAACTCATGTGAAATTGGAGTTTTCTCCAAGCTCACTAATTCGTACTGTCTGGTTGCAATTGGTGGTTCTGAGGATTTCTATAGTACCTTTGAAGCTGAATTAGGTGCTGTCATTCCCGTGGTTAAAACATCTATTCATGGCACTCGCATTATTGGTCGTCTATGTGCTGGAAATAAAAATGGGCTTCTTCTACCACACACCACTACTGACCAAGAACTCCAGCACTTGAGGAACAGCCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGATTGTCTGCTCTGGGGAATACAATTGCTTGTAATGATCATGTCGCTCTCGCACATACTGATCTTGATCGGGAAACTGAAGATCTCATTGCTGATGTTCTGGGAGTTGAGGTCTTTAGGCAGACAGTAGCAGGCAACGACCTCGTGGGAAGCTACTGTAGCTTCACAAACAGGGGTGGCTTGGTTCATCCACATACATCTATTGAAGATCTAGATGAGCTATCAACTCTTCTTCAGGTCCCATTAGTTGCTGGAACCGTGAATCGTGGAAGTGCGGTGATTGCTGCTGGGTTGACAGCAAATGACTGGACTGCATTTTGTGGTTCAGACACCAGTGCCACCGAGTTATCGGTCATTGAGAGTGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCACTAATAGACAGTTACGTATGA 738 44.58 MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEDLIADVLGVEVFRQTVAGNDLVGSYCSFTNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSAVIAAGLTANDWTAFCGSDTSATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV* 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15547688 15550611 - CsaV3_2G019580.1 Csa02g01643 519700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa02g01643 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 - -
Csa02g01643 245 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 224 IPR002769 GO:0042256|GO:0043022
Csa02g01643 245 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Csa02g01643 245 SUPERFAMILY Pentein 1 224 - -
Csa02g01643 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Csa02g01643 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Csa02g01643 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Csa02g01643 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 IPR002769 GO:0042256|GO:0043022
Csa02g01643 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Csa02g01643 245 Gene3D - 1 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02776 Csa-Chr1:24509832 Csa02g01643 Csa-Chr2:15547688 4.19E-163 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa02g01643 K03264 - csv:101212091 483.026